Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G23460.1 | CDY46183 | AT1G60780.1 | 23543752 |
| AT4G23460.1 | CDY63680 | AT1G60780.1 | 23543752 |
| AT4G23460.1 | CDY63681 | AT1G60780.1 | 23543752 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71479 | Canola | cytosol | 47.11 | 98.38 |
| Bra019302.1-P | Field mustard | cytosol | 95.0 | 97.16 |
| AT4G23460.1 | Thale cress | cytosol | 91.56 | 92.27 |
| CDY13257 | Canola | cytosol | 89.78 | 89.88 |
| KRH77672 | Soybean | endoplasmic reticulum | 84.78 | 85.63 |
| PGSC0003DMT400031784 | Potato | cytosol | 84.56 | 85.22 |
| Solyc08g081320.2.1 | Tomato | cytosol, extracellular, nucleus, plastid | 84.56 | 84.93 |
| KRH27813 | Soybean | endoplasmic reticulum, nucleus | 84.56 | 84.74 |
| KRH29071 | Soybean | cytosol, endoplasmic reticulum | 77.56 | 84.61 |
| KRH24097 | Soybean | endoplasmic reticulum | 83.44 | 83.63 |
| GSMUA_Achr1P24200_001 | Banana | cytosol | 82.89 | 82.71 |
| GSMUA_AchrUn_... | Banana | cytosol | 82.67 | 82.48 |
| VIT_02s0025g00100.t01 | Wine grape | cytosol | 83.67 | 81.85 |
| CDX86788 | Canola | cytosol | 89.67 | 69.87 |
| CDX70642 | Canola | cytosol | 7.22 | 30.95 |
| CDX97117 | Canola | plastid | 26.67 | 28.5 |
| CDX78425 | Canola | plastid | 26.0 | 27.86 |
| CDX70396 | Canola | plastid | 26.0 | 27.86 |
| CDY40224 | Canola | cytosol, plasma membrane, plastid | 23.11 | 19.05 |
| CDY41227 | Canola | cytosol | 23.0 | 18.94 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:2.60.40.1150 | MapMan:22.1.2.2 | MapMan:22.1.3.2 | Gene3D:3.30.310.10 | GO:A0A078DXX7 |
| InterPro:AP_beta | InterPro:AP_complex_bsu_1_2_4 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:B-adaptin_app_sub_C | EnsemblPlants:CDX94190 |
| ProteinID:CDX94190 | ProteinID:CDX94190.1 | InterPro:Clathrin/coatomer_adapt-like_N | InterPro:Clathrin_a/b/g-adaptin_app_Ig | InterPro:Clathrin_app_Ig-like_sf | InterPro:Clathrin_b-adaptin_app_Ig-like |
| InterPro:Coatomer/calthrin_app_sub_C | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009506 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 | GO:GO:0030131 |
| GO:GO:0030276 | EnsemblPlantsGene:GSBRNA2T00157122001 | InterPro:IPR011989 | InterPro:IPR012295 | InterPro:IPR013037 | PFAM:PF01602 |
| PFAM:PF02883 | PFAM:PF09066 | PIRSF:PIRSF002291 | PANTHER:PTHR11134 | PANTHER:PTHR11134:SF3 | SMART:SM00809 |
| SMART:SM01020 | SUPFAM:SSF48371 | SUPFAM:SSF49348 | SUPFAM:SSF55711 | InterPro:TBP_dom_sf | UniParc:UPI0004EEF7C6 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g38240DBeta-adaptin-like protein C [Source:Projected from Arabidopsis thaliana (AT4G23460) UniProtKB/Swiss-Prot;Acc:O81742]
Coordinates
chrLK031879:-:1171983..1176701
Molecular Weight (calculated)
100243.0 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.087
Length
900 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKH KFTVYANGVD SRWRRHAFLD KRKDAVKKVI AAMTVGKDVS SLFTDVLNCM QTENLELKKL VYLYLINYAK
101: SQPDLAILAV NTFVKDSQDP NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAVCVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA
201: NAVAALAEIQ DKSASPIFEI NSVTLTKLLT ALNECTEWGQ VFILDSLSRY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL
301: CKKMASPLVT LLSAEPEIQY VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC
401: AIKLERAAER CISVLLELIK IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV
501: QLQLLTATVK LFLKKPTEGP QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLEPSL LDELLANIST LSSVYHKPPE
601: AFVTRLKPTV QKTEDEDYVE GGETETSGNP VDGAAPVAAA PAPVPDLLGD LMGTDDAAIV PVDDYTTPSG PPLPVVLPAS SGQGLQISAQ LTRQDGQVFY
701: SMLLENNSQS VLDGFMIQFN KNSFGLAAAG PLQVQPLQPG ESARTMLPMV LSQNMSDGPT NSLLQVAVKN NQPPVKYFTD KIVLHALFSE DGRMERGTFL
801: ETWRSLPDSN EVQKDFPGIT ITSIDSTLDL LAASNMFFIA KRKNGNQDVL YLSARVPQGV PFLIELTAMV GQPGLKCAVK TPTPEIAPLF FESLEMLFKP
101: SQPDLAILAV NTFVKDSQDP NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAVCVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA
201: NAVAALAEIQ DKSASPIFEI NSVTLTKLLT ALNECTEWGQ VFILDSLSRY KAADPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL
301: CKKMASPLVT LLSAEPEIQY VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC
401: AIKLERAAER CISVLLELIK IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV
501: QLQLLTATVK LFLKKPTEGP QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLEPSL LDELLANIST LSSVYHKPPE
601: AFVTRLKPTV QKTEDEDYVE GGETETSGNP VDGAAPVAAA PAPVPDLLGD LMGTDDAAIV PVDDYTTPSG PPLPVVLPAS SGQGLQISAQ LTRQDGQVFY
701: SMLLENNSQS VLDGFMIQFN KNSFGLAAAG PLQVQPLQPG ESARTMLPMV LSQNMSDGPT NSLLQVAVKN NQPPVKYFTD KIVLHALFSE DGRMERGTFL
801: ETWRSLPDSN EVQKDFPGIT ITSIDSTLDL LAASNMFFIA KRKNGNQDVL YLSARVPQGV PFLIELTAMV GQPGLKCAVK TPTPEIAPLF FESLEMLFKP
001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA
Arabidopsis Description
BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.