CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78425	Canola	plastid	83.33	20.83
CDX70396	Canola	plastid	83.33	20.83
CDX97117	Canola	plastid	82.86	20.67
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	72.38	18.01
KRH52665	Soybean	plastid	72.38	17.99
Solyc08g068210.2.1	Tomato	plastid	71.9	17.98
KRH62012	Soybean	plastid	71.9	17.87
PGSC0003DMT400037585	Potato	cytosol	70.48	17.62
GSMUA_Achr1P13670_001	Banana	cytosol	70.0	17.46
EES01104	Sorghum	plastid	67.14	16.69
TraesCS3A01G228800.1	Wheat	plastid	66.19	16.53
Zm00001d044164_P002	Maize	plastid	67.14	16.51
TraesCS3D01G226500.1	Wheat	plastid	65.71	16.41
TraesCS3B01G255800.2	Wheat	plastid	65.71	16.41
Zm00001d011411_P002	Maize	plastid	67.14	16.32
HORVU3Hr1G055990.1	Barley	cytosol, plastid	66.19	16.01
VIT_00s0153g00080.t01	Wine grape	cytosol	6.19	8.97
CDX94190	Canola	cytosol	30.95	7.22
CDY13257	Canola	cytosol	30.48	7.12
CDX86788	Canola	cytosol	30.48	5.54
CDY41227	Canola	cytosol	24.29	4.67
CDY40224	Canola	cytosol, plasma membrane, plastid	23.81	4.58
Os01t0626100-01	Rice	plasma membrane	2.38	2.43
CDY71479	Canola	cytosol	0.95	0.46
Os01t0626200-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	GO:A0A078C1N0	InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDX70642	ProteinID:CDX70642	ProteinID:CDX70642.1	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	EnsemblPlantsGene:GSBRNA2T00140494001	InterPro:IPR011989
PFAM:PF01602	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SUPFAM:SSF48371	UniParc:UPI0004EF381A	SEG:seg

Description

BnaC03g07260D

Coordinates

chrLK031791:-:1365818..1367272

Molecular Weight (calculated)

23926.8 Da

IEP (calculated)

6.075

GRAVY (calculated)

0.067

Length

210 amino acids

Sequence
(BLAST)

001: MLHDSDAQVV ANCLAALQEI WSLEASHSEE KESLLSKPFI YYFFNRINEW PQCLILELAV KYLPSDSNDN FDIMNLLEDR PLHANGAVVL ATVQVFLQLT
101: LSINSVSHAV YERIKSPLLT LVSSGSPEQS YAILSHLHLL VVRAPFIFAS DYKHFCCQYN EPLYVKKLKL EMLTAIANES KHLRNWESIR AVGKIALQQY
201: DVNAIALQQY

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.