CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044164_P002	Maize	plastid	96.8	95.78
TraesCS3A01G228800.1	Wheat	plastid	88.99	89.42
TraesCS3D01G226500.1	Wheat	plastid	88.52	88.94
TraesCS3B01G255800.2	Wheat	plastid	88.52	88.94
Os01t0626100-01	Rice	plasma membrane	21.66	88.83
HORVU3Hr1G055990.1	Barley	cytosol, plastid	88.4	86.06
GSMUA_Achr1P13670_001	Banana	cytosol	77.28	77.55
KRH62012	Soybean	plastid	75.03	75.03
KRH52665	Soybean	plastid	74.44	74.44
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	72.66	72.75
PGSC0003DMT400037585	Potato	cytosol	71.01	71.43
Solyc08g068210.2.1	Tomato	plastid	70.77	71.19
CDX97117	Canola	plastid	70.41	70.67
CDX78425	Canola	plastid	70.18	70.6
CDX70396	Canola	plastid	70.18	70.6
Bra006100.1-P	Field mustard	plastid	70.18	70.6
AT5G11490.2	Thale cress	cytosol, plastid	69.11	68.71
CDX70642	Canola	cytosol	16.69	67.14
VIT_00s0153g00080.t01	Wine grape	cytosol	10.77	62.76
Os01t0626200-01	Rice	cytosol	3.55	56.6
EER94839	Sorghum	cytosol	27.22	25.64
EES13267	Sorghum	cytosol	19.05	14.62

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	EntrezGene:8054914	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	UniProt:C5XED0	InterPro:Clathrin/coatomer_adapt-like_N	EnsemblPlants:EES01104
ProteinID:EES01104	ProteinID:EES01104.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030124	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	PFAM:PF01602
PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020	EnsemblPlantsGene:SORBI_3003G227100
SUPFAM:SSF48371	unigene:Sbi.11334	InterPro:TBP_dom_sf	UniParc:UPI0001A8438E	RefSeq:XP_002455984.1	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:56432441..56445883

Molecular Weight (calculated)

92927.8 Da

IEP (calculated)

5.077

GRAVY (calculated)

-0.112

Length

845 amino acids

Sequence
(BLAST)

001: MAPTVPSAAK SASPSQPSGK SEVADLKQQL RQLAGSRAPD ADDQRRDVFK RVISCMTAGI DVSAAFGEMV LCSATSDVVT KKMCYLYVGA HARAHPDLAL
101: LTINFLQRDC RDQDPTIRGL ALRSLCSLRV PNLVEYLVTP LTTGLKDPSA YVRMIAAVGA AKLYHISATA CIDADLPASL KALMLSDPDA QVVANCLHAL
201: QEIWTLEAAN SEAAAREIET LYSKPVVFYL LNKIKEFSEW AQCIVLELAS KFLPSDNNEI FDIMNLLEDR LQHANGAVVL ATIKVFLHLT MSMTDVHQQV
301: YERIKAPLLT LVGAGSPEQS YSVLCHLHLL VMRAPMLFSS DYKSFYCQFS DPSYVKKLKL EMLTAIANES NTYEIVTELC EYAGNVDVPI ARESIRAVGK
401: IALQQYDVNA IVDRLLQFLE MDKDYVTAET LVLVKDLLRK YPQWSHDCIA VVGNISSKNI QEPKGKAALI WMLGEYSQDM HDAPYILESL VENWDEEHSP
501: EVRLHLLTAV MKCFFKRPPE TQKALGATLA AGLSDTHQDV HDRALFYYRL LQYNPNVAER VVNPPKQAVS VFADTQSSEI KDRIFDEFNS LSVVYQKPSY
601: MFTDKEHRGP FEYSEDLTSL TVGAEDPENV ISAQRYQEND NDLLLSTSDK EDNGTRASNG SSTSTYNAPS DLISPSLIGS QTPAETSLIN TGGPTHSSQS
701: NFSLDDLLGL GVTEAPAPPP PALTLNSKPV LDPGTFQRKW GQLALALSQE CSLSPQGAAA LMNPQSLIRH MQSNYIQCIA SGGQPPNYKF FFYAQKDGAT
801: AFFLVECIVN TASAKAQLKI KADDGAAVEA FSTLFQSALS KFGLS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.