Factsheet for PGSC0003DMT400037585

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g068210.2.1	Tomato	plastid	94.64	94.64
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	80.83	80.45
KRH62012	Soybean	plastid	80.36	79.88
KRH52665	Soybean	plastid	80.36	79.88
Bra006100.1-P	Field mustard	plastid	76.55	76.55
CDX78425	Canola	plastid	76.55	76.55
CDX70396	Canola	plastid	76.43	76.43
AT5G11490.2	Thale cress	cytosol, plastid	77.26	76.35
CDX97117	Canola	plastid	76.19	76.01
GSMUA_Achr1P13670_001	Banana	cytosol	75.71	75.53
VIT_00s0153g00080.t01	Wine grape	cytosol	12.26	71.03
EES01104	Sorghum	plastid	71.43	71.01
TraesCS3D01G226500.1	Wheat	plastid	70.83	70.75
TraesCS3A01G228800.1	Wheat	plastid	70.83	70.75
TraesCS3B01G255800.2	Wheat	plastid	70.71	70.63
CDX70642	Canola	cytosol	17.62	70.48
Zm00001d044164_P002	Maize	plastid	70.48	69.32
Zm00001d011411_P002	Maize	plastid	70.6	68.63
HORVU3Hr1G055990.1	Barley	cytosol, plastid	70.6	68.32
Os01t0626100-01	Rice	plasma membrane	16.19	66.02
Os01t0626200-01	Rice	cytosol	2.74	43.4
PGSC0003DMT400031784	Potato	cytosol	29.52	27.77
PGSC0003DMT400076344	Potato	cytosol	7.02	9.23

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102591040	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030124	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989
InterPro:IPR012295	UniProt:M1B5K7	PFAM:PF01602	PFAM:PF09066	EnsemblPlantsGene:PGSC0003DMG400014497	PGSC:PGSC0003DMG400014497
EnsemblPlants:PGSC0003DMT400037585	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020	SUPFAM:SSF48371
InterPro:TBP_dom_sf	UniParc:UPI0002948384	RefSeq:XP_006356645.1	SEG:seg	:	:

Description

AP-2 complex subunit beta-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014497]

Coordinates

chr8:+:43101088..43117288

Molecular Weight (calculated)

93440.8 Da

IEP (calculated)

5.362

GRAVY (calculated)

-0.145

Length

840 amino acids

Sequence
(BLAST)

001: MAPPAQTNRS PSPSQPSGKG EVSDLKMQLR QLAGSRAPGT DDAKRELFKK VISCMTIGID VSSVFSEMVM CSATSDIVLK KMCYLYVGNY AKHNPDLALL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVT NLVEYLVGPL GAGLKDSNSY VRTVATMGVL KLYHISESTC MDADFPATLK HLMLNDREAQ VVANCLCALQ
201: EIWGLEATKS EEASTERETL LSKPLIYYLL NRFKEFSEWA QCAVLDLVSK YVPSDSSEIF DMMNLLEDRL QHANGAVVLA TIKLFLQLTL SMADIHQQVY
301: ERIKAPLLTL VSSGGPEQSY AVLSHLHLLV MRAPYIFSAD YKHFYCQYNE PFYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIPMA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDHVTAETL VLVKDLLRKY PQWSHDCIAV VGNISSKNVQ EPKAKAALIW MLGEYAQDMQ DAPYVLESLI ENWEEEHSAE
501: VRLHLLTAVV KCFFRRPPET QKALGAALAA GVNDFHQDVH DRALLYYRLL QYNVSIAERV VNPPKQAVSV FADTQSNEIK DRIFDEFNSL SVVYQKPSYM
601: FTDKEHRGPF AFSEEIGNLS LGEESTDNVV PAQRIEANDK DLLLSTSDKE ESKGSIHNSS AYSAPGYDGS LAAPSQTDLV SLDYKPTPNV PSATFAIDDL
701: LGLGLPAAAS PPPPTPVLKL NTKAALEPNA FQQKWRQLPI SISQETSINP QGVAIMTSPQ TLIHHMQGHS IHCIASGGQA PNFKFFFYAQ KAEEPSTYLV
801: ECVVNSSSCK VQLKIKVDDQ STSQAFSELF QSALSKFGFS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.