Factsheet for Os01t0626200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
unclear 1
plastid 1
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory, unclear
PProwler:	secretory
TargetP:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044164_P002	Maize	plastid	58.49	3.63
EES01104	Sorghum	plastid	56.6	3.55
Zm00001d011411_P002	Maize	plastid	56.6	3.47
TraesCS3D01G226500.1	Wheat	plastid	49.06	3.09
TraesCS3B01G255800.2	Wheat	plastid	49.06	3.09
TraesCS3A01G228800.1	Wheat	plastid	49.06	3.09
KRH52665	Soybean	plastid	49.06	3.08
KRH62012	Soybean	plastid	49.06	3.08
Solyc08g068210.2.1	Tomato	plastid	47.17	2.98
GSMUA_Achr1P13670_001	Banana	cytosol	47.17	2.97
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	45.28	2.84
HORVU3Hr1G055990.1	Barley	cytosol, plastid	45.28	2.76
Bra006100.1-P	Field mustard	plastid	43.4	2.74
PGSC0003DMT400037585	Potato	cytosol	43.4	2.74
CDX78425	Canola	plastid	43.4	2.74
CDX70396	Canola	plastid	41.51	2.62
CDX97117	Canola	plastid	39.62	2.49
AT5G11490.2	Thale cress	cytosol, plastid	39.62	2.47
Os03t0355600-01	Rice	plasma membrane	15.09	0.9
Os01t0973300-01	Rice	cytosol	11.32	0.65
Os01t0626100-01	Rice	plasma membrane	0.0	0.0
VIT_00s0153g00080.t01	Wine grape	cytosol	0.0	0.0
CDX70642	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.310.10	MapMan:35.2	UniProt:A0A0P0V5G8	InterPro:AP_beta	InterPro:B-adaptin_app_sub_C	ProteinID:BAS73253.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR012295	EnsemblPlantsGene:Os01g0626200
EnsemblPlants:Os01t0626200-01	PFAM:PF09066	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	InterPro:TBP_dom_sf	UniParc:UPI0000DD8C13

Description

Clathrin adaptor, beta-adaptin, appendage, C-terminal subdomain domain containing protein. (Os01t0626200-01)

Coordinates

chr1:+:25002693..25003291

Molecular Weight (calculated)

5532.5 Da

IEP (calculated)

6.480

GRAVY (calculated)

0.242

Length

53 amino acids

Sequence
(BLAST)

1: YAQKDGATAF FLVECIVNTA SAKAQIKVKA DDGTAAEAFS TLFQSALSKF GLS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.