Factsheet for VIT_04s0008g03880.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62012	Soybean	plastid	85.43	85.33
KRH52665	Soybean	plastid	85.43	85.33
Solyc08g068210.2.1	Tomato	plastid	81.4	81.79
PGSC0003DMT400037585	Potato	cytosol	80.45	80.83
Bra006100.1-P	Field mustard	plastid	78.44	78.81
CDX70396	Canola	plastid	78.44	78.81
CDX78425	Canola	plastid	78.44	78.81
CDX97117	Canola	plastid	78.55	78.74
AT5G11490.2	Thale cress	cytosol, plastid	78.55	78.0
VIT_00s0153g00080.t01	Wine grape	cytosol	13.39	77.93
GSMUA_Achr1P13670_001	Banana	cytosol	77.61	77.79
EES01104	Sorghum	plastid	72.75	72.66
CDX70642	Canola	cytosol	18.01	72.38
TraesCS3D01G226500.1	Wheat	plastid	71.92	72.18
TraesCS3A01G228800.1	Wheat	plastid	71.92	72.18
TraesCS3B01G255800.2	Wheat	plastid	71.92	72.18
Zm00001d044164_P002	Maize	plastid	72.27	71.43
Zm00001d011411_P002	Maize	plastid	71.56	69.91
HORVU3Hr1G055990.1	Barley	cytosol, plastid	71.56	69.59
Os01t0626100-01	Rice	plasma membrane	16.0	65.53
Os01t0626200-01	Rice	cytosol	2.84	45.28
VIT_02s0025g00100.t01	Wine grape	cytosol	29.27	26.85
VIT_13s0019g01530.t01	Wine grape	cytosol	18.96	14.04

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100252486	wikigene:100252486	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	ProteinID:CBI20897	ProteinID:CBI20897.3
InterPro:Clathrin/coatomer_adapt-like_N	UniProt:D7SUE8	EMBL:FN595231	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989	InterPro:IPR012295	EntrezGene:LOC100252486
wikigene:LOC100252486	PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26
SMART:SM01020	SUPFAM:SSF48371	InterPro:TBP_dom_sf	TIGR:TC54406	UniParc:UPI000198317F	ArrayExpress:VIT_04s0008g03880
EnsemblPlantsGene:VIT_04s0008g03880	EnsemblPlants:VIT_04s0008g03880.t01	unigene:Vvi.6184	RefSeq:XP_002284239	RefSeq:XP_002284239.1	SEG:seg

Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:D7SUE8]

Coordinates

chr4:-:3199857..3211964

Molecular Weight (calculated)

93264.3 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.139

Length

844 amino acids

Sequence
(BLAST)

001: MAPPAQSQRS PSPSQPSGKG EVSDLKLQLR QHAGSRAPGA DDAKRELFKK VISYMTIGID VSSLFGEMVM CSVTSDIVLK KMCYLYVGNY AKGNPDLALL
101: TINFLQKDCK DEDPMIRGLA LRSLCSLRVA NLVEYLVGPL GSGLKDSNSY VRTVAASAVL KLYHISASTC VDADFPAILK HLMLNDQDTQ VVANCLSSLQ
201: EIWSSEASTS EEASREREAL LSKPVIYYFL NRIKEFSEWA QCLVLELVAN YVPSDNSEIF DIMNLLEDRL QHANGAVVLA TIKVFLQLTL SMADVHQQVY
301: ERIKAPLLTL VSSGSQEQSY AVLSHLHLLV MRAPILFSSD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIPIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCIAV VGNISSKNVQ EPKAKAALIW MLGEYSQDMH DAPYVLESVV DNWDDEHSAE
501: VRLHLLTAVL KCFLKRPPET QKALGAALAA GLADFHQDVH DRALFYYRLL QYNVSVAERV VNPPKQAVSV FADTQSSEVK DRIFDEFNSL SVVYQKPSYM
601: FTDKEHRGPF EFSDELGSLS IGADSADNVV PAQRVEANDK DLLLSTSEKE ESRGATNNGS AYNAPMYDGT SMPTGASQLQ SELAISNTMV PSHSPSSSLA
701: VDDLLGLGVP LAPASPPPPP PLKLNEKAVL DPGTFQQKWR QLPISLSQDY SMSPQGVAAL TRPQAFLRHM QGHSIHCIAS GGQAPNFKFF FFAQKAEEPS
801: TFLVECIINT SSAKGQIKIK ADDQSMSQAF STSFQSALSK FGTT

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.