Factsheet for VIT_00s0153g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0626100-01	Rice	plasma membrane	55.86	39.32
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	77.93	13.39
KRH52665	Soybean	plastid	77.24	13.25
KRH62012	Soybean	plastid	75.86	13.02
CDX97117	Canola	plastid	72.41	12.47
AT5G11490.2	Thale cress	cytosol, plastid	72.41	12.35
Solyc08g068210.2.1	Tomato	plastid	71.03	12.26
PGSC0003DMT400037585	Potato	cytosol	71.03	12.26
Bra006100.1-P	Field mustard	plastid	70.34	12.14
CDX78425	Canola	plastid	70.34	12.14
CDX70396	Canola	plastid	70.34	12.14
GSMUA_Achr1P13670_001	Banana	cytosol	69.66	12.0
TraesCS3A01G228800.1	Wheat	plastid	63.45	10.94
TraesCS3B01G255800.2	Wheat	plastid	63.45	10.94
TraesCS3D01G226500.1	Wheat	plastid	63.45	10.94
EES01104	Sorghum	plastid	62.76	10.77
Zm00001d044164_P002	Maize	plastid	62.76	10.66
HORVU3Hr1G055990.1	Barley	cytosol, plastid	63.45	10.6
Zm00001d011411_P002	Maize	plastid	62.07	10.42
VIT_02s0025g00100.t01	Wine grape	cytosol	40.69	6.41
CDX70642	Canola	cytosol	8.97	6.19
VIT_13s0019g01530.t01	Wine grape	cytosol	26.9	3.42
Os01t0626200-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	EMBL:AM475039	InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:CAN77374	ProteinID:CAN77374.1	ProteinID:CBI29406	ProteinID:CBI29406.3	InterPro:Clathrin/coatomer_adapt-like_N	UniProt:D7TFY3
EMBL:FN595775	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	InterPro:IPR011989	PFAM:PF01602	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26
SUPFAM:SSF48371	UniParc:UPI0001BE2F2C	ArrayExpress:VIT_00s0153g00080	EnsemblPlantsGene:VIT_00s0153g00080	EnsemblPlants:VIT_00s0153g00080.t01	SEG:seg

Description

No Description!

Coordinates

chrUn:+:4843673..4844129

Molecular Weight (calculated)

15917.7 Da

IEP (calculated)

7.204

GRAVY (calculated)

0.333

Length

145 amino acids

Sequence
(BLAST)

001: MLAAGQHVSS LFGEMVMCSM TPNIIMEKMC YLYVGNYAKG NPNLALLTIN FLQKDCKDKD PMIRWLALRS LCSLRVANLV EYLVGSLGSG LKDSDSYVRM
101: VVATGVLKIS ASTHDADFPA MLKCLVLNYP DTQVVANCLS SLQEI

Best Arabidopsis Sequence Match ( AT5G11490.2 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFVS LTFDFVSLCY

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.