CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62012	Soybean	plastid	96.8	96.8
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	85.33	85.43
Solyc08g068210.2.1	Tomato	plastid	80.24	80.71
PGSC0003DMT400037585	Potato	cytosol	79.88	80.36
Bra006100.1-P	Field mustard	plastid	79.29	79.76
CDX78425	Canola	plastid	79.29	79.76
CDX70396	Canola	plastid	78.93	79.4
CDX97117	Canola	plastid	79.05	79.33
AT5G11490.2	Thale cress	cytosol, plastid	78.7	78.24
GSMUA_Achr1P13670_001	Banana	cytosol	77.4	77.67
VIT_00s0153g00080.t01	Wine grape	cytosol	13.25	77.24
TraesCS3A01G228800.1	Wheat	plastid	74.2	74.55
EES01104	Sorghum	plastid	74.44	74.44
TraesCS3D01G226500.1	Wheat	plastid	74.08	74.44
TraesCS3B01G255800.2	Wheat	plastid	73.96	74.32
Zm00001d044164_P002	Maize	plastid	73.61	72.83
CDX70642	Canola	cytosol	17.99	72.38
Zm00001d011411_P002	Maize	plastid	73.73	72.11
HORVU3Hr1G055990.1	Barley	cytosol, plastid	73.96	72.0
Os01t0626100-01	Rice	plasma membrane	16.92	69.42
Os01t0626200-01	Rice	cytosol	3.08	49.06
KRH77672	Soybean	endoplasmic reticulum	29.47	27.95
KRH27813	Soybean	endoplasmic reticulum, nucleus	29.47	27.73
KRH29071	Soybean	cytosol, endoplasmic reticulum	26.86	27.52
KRH24097	Soybean	endoplasmic reticulum	29.23	27.51
KRH15094	Soybean	cytosol, peroxisome, plastid	19.64	14.69
KRH73041	Soybean	cytosol, peroxisome, plastid	19.41	14.51

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100809730	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	EMBL:ACUP02003427	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	EnsemblPlantsGene:GLYMA_06G081600
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276
InterPro:IPR011989	InterPro:IPR012295	UniProt:K7KTT9	EnsemblPlants:KRH52665	ProteinID:KRH52665	ProteinID:KRH52665.1
PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020
SUPFAM:SSF48371	InterPro:TBP_dom_sf	UniParc:UPI000233A309	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:6273644..6283819

Molecular Weight (calculated)

93390.3 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.133

Length

845 amino acids

Sequence
(BLAST)

001: MAPPPPQSHR SPSPSQPSGK SEVSDLKSQL RQLAGSRAPG ADDSKRDLFK KVISNMTIGI DVSSLFGEMV MCSATSDIVL KKMCYLYVGN YAKGNPDLAL
101: LTINFLQRDC KDEDPMIRGL ALRSLCSLRV ANLVEYLVGP LGSGLKDNNS YVRMVAVIGV LKLYHISTST CIDADFPATL KHLLLNDPDT QVVANCLSAL
201: QEIWTLESST SEEAARERET LLSKPVVYYL LNRIKEFSEW AQCLVLELVS KYIPSDNSEI FDIMNLLEDR LQHANGAVVL ATIKVFLQLT LSMADVHQQV
301: YERIKAPLLT QVSSGSPEQS YAVLSHLHLL VMRAPYIFSS DYKHFYCQYN EPSYVKKLKL EMLTAVANES NTYEIVTELC EYAANVDIPI ARESIRAVGK
401: IALQQYDVNA IVDRLLQFLE MEKDYVTSEA LVLVKDLLRK YPQWSQDCIA VVGNISSKNV QEPKAKAALI WMLGEYSQDM HDAPYVLESL VENWDEEHSA
501: EVRLHLLTAV MKCFFKRPPE TQKALGAALA AGIATDFHQD VHDRALFYYR LLQYNVSVAE SVVNPPKQAV SVFADTQSSE IKDRIFDEFN SLSVVYQKPS
601: YMFTDKEHRG TFEFADELGN LSISAESADS VVPAQRVEAN DKDLLLSTSE KDEGRDPGSN GSVYNAPSYN GSSAPTTSQP LADLAFPSTG ISGQAPASSL
701: AIDDLLGLDF PVETAAMPSP PPLNLNPKAV LDPGAFQQKW RQLPISLSEE YSLSPQGVTS LTTPHALLRH MQSHSIQCIA SGGQSPNFKF FFFAQKAEAA
801: SMYLVECIIN TSSAKSQIKI KADDQSSSQA FSTLFQSALS KFGLP

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.