CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78425	Canola	plastid	98.81	98.81
AT5G11490.2	Thale cress	cytosol, plastid	92.26	91.18
CDX97117	Canola	plastid	90.71	90.5
CDX70642	Canola	cytosol	20.83	83.33
KRH62012	Soybean	plastid	79.52	79.05
KRH52665	Soybean	plastid	79.4	78.93
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	78.81	78.44
Solyc08g068210.2.1	Tomato	plastid	76.67	76.67
PGSC0003DMT400037585	Potato	cytosol	76.43	76.43
GSMUA_Achr1P13670_001	Banana	cytosol	75.24	75.06
VIT_00s0153g00080.t01	Wine grape	cytosol	12.14	70.34
EES01104	Sorghum	plastid	70.6	70.18
Zm00001d044164_P002	Maize	plastid	70.6	69.44
TraesCS3A01G228800.1	Wheat	plastid	69.4	69.32
TraesCS3D01G226500.1	Wheat	plastid	69.17	69.08
TraesCS3B01G255800.2	Wheat	plastid	69.17	69.08
Zm00001d011411_P002	Maize	plastid	70.71	68.75
Os01t0626100-01	Rice	plasma membrane	16.43	66.99
HORVU3Hr1G055990.1	Barley	cytosol, plastid	69.05	66.82
Os01t0626200-01	Rice	cytosol	2.62	41.51
CDY13257	Canola	cytosol	27.86	26.03
CDX94190	Canola	cytosol	27.86	26.0
CDX86788	Canola	cytosol	27.98	20.35
CDY71479	Canola	cytosol	8.45	16.47
CDY41227	Canola	cytosol	18.57	14.27
CDY40224	Canola	cytosol, plasma membrane, plastid	18.33	14.1

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	GO:A0A078C0A7	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	EnsemblPlants:CDX70396	ProteinID:CDX70396	ProteinID:CDX70396.1
InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276
EnsemblPlantsGene:GSBRNA2T00140201001	InterPro:IPR011989	InterPro:IPR012295	PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291
PANTHER:PTHR11134	PANTHER:PTHR11134:SF26	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF55711	InterPro:TBP_dom_sf
UniParc:UPI0004EF1705	SEG:seg	:	:	:	:

Description

BnaC03g04800D

Coordinates

chrLK031791:+:235724..239791

Molecular Weight (calculated)

93317.2 Da

IEP (calculated)

5.004

GRAVY (calculated)

-0.133

Length

840 amino acids

Sequence
(BLAST)

001: MPPPAASSRY PSPSQPSGKS EVTDLKSQLR QLAGSRAPGV DDSKRDLFKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLLGPL GSGLKDNNSY VRTIAVTGVL KLYHISASTC IDAEFPATLK SLMLHDSDAQ VVANCLAALQ
201: EIWSLEASHS EEACREKESL LSKPLIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFASD YKHFYCQYNE PSYVKKLKLE MLTAIANESN TYEIVTELCE YAANVDIEIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKH PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYILENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGIALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPQQAVSA FADTQSSEIK DRIFDEFNSL SVIYQKPSYI
601: FTDKEHRGPF EFSDELGSTS ITPEVSSDIV PAQQFEANDK DLLLSTDEKD DNKGLSSNNG SAYTAPYESS NISSQMQELA ISGPAASATT TQSSFDFDDL
701: LGLGLSTAPA PTPSPPLLKL NARAALDPRA FQQKWRQLPI SLSQEYSVNP QGIAALTVPQ SLIKHMQSHS IHCIASGGQS PNFKFFFFAQ KEAEPLDYLT
801: ECIINSSSAK AQIKVKADEQ STSQAFATVF ETALSKFGMP

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.