CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94190	Canola	cytosol	98.38	47.11
CDY13257	Canola	cytosol	85.38	40.93
Os03t0355600-01	Rice	plasma membrane	74.25	35.83
TraesCS4B01G165000.1	Wheat	cytosol, golgi	74.01	35.52
HORVU4Hr1G045980.10	Barley	cytosol	73.78	35.37
TraesCS4D01G166700.1	Wheat	cytosol	73.55	35.3
EER94839	Sorghum	cytosol	73.32	35.23
TraesCS4A01G166200.2	Wheat	cytosol	73.55	35.18
CDX86788	Canola	cytosol	85.15	31.77
CDX97117	Canola	plastid	18.1	9.26
CDX70396	Canola	plastid	16.47	8.45
CDX78425	Canola	plastid	16.47	8.45
CDY40224	Canola	cytosol, plasma membrane, plastid	16.01	6.32
CDY41227	Canola	cytosol	15.55	6.13
Zm00001d018154_P001	Maize	extracellular	2.78	3.37
CDX70642	Canola	cytosol	0.46	0.95

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	GO:A0A078JXQ1
UniProt:A0A078JXQ1	InterPro:AP_beta	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	EnsemblPlants:CDY71479
ProteinID:CDY71479	ProteinID:CDY71479.1	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like
InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	EnsemblPlantsGene:GSBRNA2T00016539001	InterPro:IPR011989	InterPro:IPR012295
InterPro:IPR013037	PFAM:PF01602	PFAM:PF02883	PFAM:PF09066	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3
SMART:SM00809	SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf
UniParc:UPI0004EE4354	SEG:seg	:	:	:	:

Description

BnaAnng37610DBnaAnng37610D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXQ1]

Coordinates

chrLK046021:-:544..2628

Molecular Weight (calculated)

47082.1 Da

IEP (calculated)

4.129

GRAVY (calculated)

-0.160

Length

431 amino acids

Sequence
(BLAST)

001: WIIGEYAERI DNADELLESF LENFPEEPAQ VQLQLLTATV KLFLKKPTEG PQQMIQVVLN NATVETDNPD LRDRAYIYWR LLSTDPEAAK DVVLAEKPVI
101: TDDSNQLEPS LLDELLANIS TLSSVYHKPP EAFVTRLKPT VQKTEDEDYV EGGETETSGN PVDGAAPVAA APAPVPDLLG DLMGTDDAAI VPVDDYTTLS
201: GPPLPVVLPA SSGQGLQISA QLTRQDGQVF YNMLLENNSQ TVLDGFMIQF NKNSFGLAAA GPLQVQPLQP GESARTMLPM VLSQNMSDGP TNSLLQVAVK
301: NNQPPVKYFT DKIVLHALFS EDGRMERGTF LETWRSLPDS NEVQKDFPGI TITSIDSTLD LLAASNMFFI AKRKNGNQDV LYLSAKAPKG VPFLIELTAM
401: VGQPGLKCAV KTPTPEIAPL FFESLEMLFK S

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.