Factsheet for Os03t0355600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0703600-01
Os05t0543100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G23460.1	Os01t0703600-01	AT1G60780.1	23543752
AT4G23460.1	Os05t0543100-01	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94839	Sorghum	cytosol	95.3	94.87
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	95.3	94.77
Zm00001d029196_P002	Maize	cytosol	90.48	94.72
TraesCS4B01G165000.1	Wheat	cytosol, golgi	93.73	93.21
TraesCS4D01G166700.1	Wheat	cytosol	93.5	92.98
HORVU4Hr1G045980.10	Barley	cytosol	93.39	92.77
TraesCS4A01G166200.2	Wheat	cytosol	93.17	92.34
GSMUA_Achr1P24200_001	Banana	cytosol	87.23	86.36
KRH77672	Soybean	endoplasmic reticulum	86.0	86.2
GSMUA_AchrUn_...	Banana	cytosol	87.01	86.14
KRH27813	Soybean	endoplasmic reticulum, nucleus	85.55	85.08
PGSC0003DMT400031784	Potato	cytosol	84.43	84.43
AT4G23460.1	Thale cress	cytosol	84.32	84.32
Bra019302.1-P	Field mustard	cytosol	83.09	84.32
Solyc08g081320.2.1	Tomato	cytosol, extracellular, nucleus, plastid	84.32	84.04
Bra035228.1-P	Field mustard	cytosol	84.43	83.87
KRH29071	Soybean	cytosol, endoplasmic reticulum	77.38	83.76
KRH24097	Soybean	endoplasmic reticulum	83.99	83.52
AT4G11380.2	Thale cress	cytosol	84.43	82.31
VIT_02s0025g00100.t01	Wine grape	cytosol	84.32	81.85
CDY71479	Canola	cytosol	35.83	74.25
Os01t0626100-01	Rice	plasma membrane	8.29	35.92
Os01t0973300-01	Rice	cytosol	17.25	16.61
Os01t0626200-01	Rice	cytosol	0.9	15.09

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1150	MapMan:22.1.2.2	MapMan:22.1.3.2	Gene3D:3.30.310.10	InterPro:AP_beta
InterPro:AP_complex_bsu_1_2_4	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	ProteinID:BAF12049.1	ProteinID:BAS84230.1
ProteinID:BAS84231.1	ProteinID:BAS84232.1	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Clathrin_b-adaptin_app_Ig-like
InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989
InterPro:IPR012295	InterPro:IPR013037	EnsemblPlantsGene:Os03g0355600	EnsemblPlants:Os03t0355600-01	PFAM:PF01602	PFAM:PF02883
PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF3	UniProt:Q0DRT9	SMART:SM00809
SMART:SM01020	SUPFAM:SSF48371	SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0000E1208A
SEG:seg	:	:	:	:	:

Description

Similar to Adapter-related protein complex 2 beta 1 subunit (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment). (Os03t0355600-01);Similar to predicted protein. (Os03t0355600-02);Similar to predicted protein. (Os03t0355600-03);Similar to predicted protein. (Os03t0355600-04)

Coordinates

chr3:-:13586838..13592878

Molecular Weight (calculated)

98838.1 Da

IEP (calculated)

4.734

GRAVY (calculated)

-0.065

Length

893 amino acids

Sequence
(BLAST)

001: HDSKYFSTTK KGEIPELKEE LNSQYKDKRK DAVKKVIAAM TVGKDVSSLF TDVVNCMQTE NLELKKLVYL YLINYAKSQP DLAILAVNTF VKDSQDPNPL
101: IRALAVRTMG CIRVDKITEY LCDPLQRCLK DDDPYVRKTA AICVAKLYDI NAELVEDRGF LEALKDLISD NNPMVVANAV AALAEIQDSS TRPIFEITSH
201: TLSKLLTALN ECTEWGQVFI LDSLSRYKAA DAREAENIVE RVTPRLQHAN CAVVLSAVKI ILLQMELITS TDVVRNLCKK MAPPLVTLLS AEPEIQYVAL
301: RNINLIVQKR PTILAHEIKV FFCKYNDPIY VKMEKLEIMI KLASDRNIDQ VLLEFKEYAT EVDVDFVRKA VRAIGRCAIK LERAAERCIS VLLELIKIKV
401: NYVVQEAIIV IKDIFRRYPN TYESIIATLC ESLDTLDEPE AKASMIWIIG EYAERIDNAD ELLESFLETF PEEPALVQLQ LLTATVKLFL KKPTEGPQQM
501: IQAVLNNATV ETDNPDLRDR AYIYWRLLST DPEAAKDVVL AEKPVISDDS NQLDSSLLDD LLANISTLSS VYHKPPEAFV SRVKTAPRAD DEEFADTAET
601: GYSESPSQGV DGASPSSSAG TSSNVPVKQP AAPAAPAPMP DLLGDLMGMD NSIVPVDEPT APSGPPLPVL LPSTTGQGLQ ISAQLVRRDG QIFYDISFDN
701: GTQTVLDGFM IQFNKNTFGL AAGGALQVSP LQPGTSARTL LPMVAFQNLS PGAPSSLLQV AVKNNQQPVW YFNDKIPMHA FFGEDGKMER TSFLEAWKSL
801: PDDNEFSKEF PSSVVSSIDA TVEHLAASNV FFIAKRKNSN KDVLYMSAKI PRGIPFLIEL TAAVGVPGVK CAVKTPNKEM VALFFEAMES LLK

Best Arabidopsis Sequence Match ( AT4G23460.1 )
(BLAST)

001: MSGHDSKYFS TTKKGEIPEL KEELNSQYKD KRKDAVKKVI AAMTVGKDVS SLFTDVVNCM QTENLELKKL VYLYLINYAK SQPDLAILAV NTFVKDSQDP
101: NPLIRALAVR TMGCIRVDKI TEYLCDPLQK CLKDDDPYVR KTAAICVAKL FDINAELVED RGFLEALKDL ISDNNPMVVA NAVAALAEIQ ENSTSPIFEI
201: NSTILTKLLT ALNECTEWGQ VFILDALSRY KASDPREAEN IVERVTPRLQ HANCAVVLSA VKMILQQMEL ITSTDVIRNL CKKMAPPLVT LLSAEPEIQY
301: VALRNINLIV QKRPTILAHE IKVFFCKYND PIYVKMEKLE IMIKLASDRN IDQVLLEFKE YATEVDVDFV RKAVRAIGRC AIKLERAAER CISVLLELIK
401: IKVNYVVQEA IIVIKDIFRR YPNTYESIIA TLCESLDTLD EPEAKASMIW IIGEYAERID NADELLESFL ENFPEEPAQV QLQLLTATVK LFLKKPTEGP
501: QQMIQVVLNN ATVETDNPDL RDRAYIYWRL LSTDPEAAKD VVLAEKPVIT DDSNQLDPSL LDELLANIST LSSVYHKPPE AFVTRLKTTV QKTEDEDYVE
601: GSETGYPEAS GNPVDGAASP SATTGYVTKL AAAPAPVPDL LGDLMGSDNA AIVPVDEPTT PSGRPLPVVL PASKGQGLQI SAQLTRQDGQ VFYSMLLENN
701: SQSLLDGFMI QFNKNSFGLA AVGSLQVPPL QPGASARTMM PMVLSQNMST GSTSSVLQVA VKNNQQPVWY FEDKIVLNAL FSEDGRMERG TFLETWKSLP
801: DSNEVQKEFP GITITSVEST LDLLAASNMF FIAKRKNGNQ DVLYLSAKVP RGIPFLIELT AIVGQPGLKC AVKTPTPEIA PLFFEAVEIL FKA

Arabidopsis Description

BETAC-ADBeta-adaptin-like protein C [Source:UniProtKB/Swiss-Prot;Acc:O81742]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.