Factsheet for Zm00001d011411_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044164_P002	Maize	plastid	91.78	92.86
Os01t0626100-01	Rice	plasma membrane	21.06	88.35
TraesCS3A01G228800.1	Wheat	plastid	85.65	87.99
TraesCS3D01G226500.1	Wheat	plastid	85.3	87.63
TraesCS3B01G255800.2	Wheat	plastid	85.3	87.63
HORVU3Hr1G055990.1	Barley	cytosol, plastid	85.07	84.68
GSMUA_Achr1P13670_001	Banana	cytosol	74.88	76.84
KRH62012	Soybean	plastid	72.57	74.2
KRH52665	Soybean	plastid	72.11	73.73
VIT_04s0008g03880.t01	Wine grape	cytosol, plastid	69.91	71.56
Bra006100.1-P	Field mustard	plastid	68.75	70.71
CDX70396	Canola	plastid	68.75	70.71
CDX78425	Canola	plastid	68.75	70.71
PGSC0003DMT400037585	Potato	cytosol	68.63	70.6
Solyc08g068210.2.1	Tomato	plastid	68.4	70.36
CDX97117	Canola	plastid	67.94	69.72
AT5G11490.2	Thale cress	cytosol, plastid	67.82	68.94
CDX70642	Canola	cytosol	16.32	67.14
VIT_00s0153g00080.t01	Wine grape	cytosol	10.42	62.07
Os01t0626200-01	Rice	cytosol	3.47	56.6
Zm00001d030865_P001	Maize	cytosol	2.78	33.33
Zm00001d047464_P024	Maize	cytosol, mitochondrion, plastid	26.85	25.84
Zm00001d029196_P002	Maize	cytosol	25.35	25.67
Zm00001d032260_P001	Maize	plastid	4.28	23.42
Zm00001d018154_P001	Maize	extracellular	7.29	17.7
Zm00001d035093_P002	Maize	plastid	19.21	14.54

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.2	Gene3D:3.30.310.10	UniProt:A0A1D6FZU7	InterPro:AP_beta	InterPro:AP_complex_bsu_1_2_4
ProteinID:AQK96795.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:B-adaptin_app_sub_C	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0030276	InterPro:IPR011989
InterPro:IPR012295	PFAM:PF01602	PFAM:PF09066	PIRSF:PIRSF002291	PANTHER:PTHR11134	PANTHER:PTHR11134:SF26
SMART:SM01020	SUPFAM:SSF48371	InterPro:TBP_dom_sf	UniParc:UPI000843C510	EnsemblPlantsGene:Zm00001d011411	EnsemblPlants:Zm00001d011411_P002
EnsemblPlants:Zm00001d011411_T002	SEG:seg	:	:	:	:

Description

Adaptin region family protein

Coordinates

chr8:+:149791810..149800697

Molecular Weight (calculated)

95178.3 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.122

Length

864 amino acids

Sequence
(BLAST)

001: MAPTVPSAAK SASPSQPSGK SEVADLKQQL RQLAGSRAPD ADDQRRDVFK RVISCMTAGI DVSAAFGEMV LCSATSDVVT KKMCYLYVGS HARAHPDLAL
101: LTINFLQRDC RDQDPTIRGL ALRSLCSLRV PNLVEYLVTP LTTGLKDPSA YVRTIAAVGA AKLYHISATA CIDADLPASL KALMLSDPDA QVKYPGTNCL
201: VKLCSNPDYI SDLQVVANCL HALQEIWTLE AANSEAAARE IETLYSKPVV FYLLNKIKEF SEWAQCIVLE LASKFLPSDN NEIFDIMNLL EDRLQHANGA
301: VVLATIKVFL HLTMSMTDVH QQVYERIKAP LLTLVGAGSP EQSYSVLCHL HLLVMRAPML FSSDYKSFYC QFSDPSYVKK LKLEMLTAIA NESNTYEIVT
401: ELCEYAGNVD VPIARESIRA VGKIALQQYD VNAIVDRLLQ FLEMDKDYVT AETLVLVKDL LRKYPQWSHD CIAVVGNISS KNIQEPKGKA ALIWMLGEYS
501: QDMHDAPYIL ESLVENWDEE HSPEVRLHLL TAVMKCFFKR PPETQKALGD TLAAGLSDTH QDVHDRALFY YRLLQYSPNV AERVVNPPKQ AVSVFADTQS
601: SEIKDRIFDE FNSLSVVYQK PSYMFTDKEH RGPFEYSEDL TGLTEDPENV ISAQRYQEND NDLLLSTSDK EDNGTRASNG SSTSTYNAPS DLISPSLISS
701: QAPAETSLVN TGGTYSSQSN FSLDDLLGLS VTEAPALPQP TLALNSKPVL DPGTFQRKWG QLALALSQEC SLSPQGAVAL MNPQSLIRHM QSNHIQCIAS
801: GGQPPNYKFF FYAQKDGAAA FFLVECIVNT ASAKAQLKIK ADDGTAAEAF SSLFQSALSK FGLS

Best Arabidopsis Sequence Match ( AT5G11490.1 )
(BLAST)

001: MAPPAASQRY PSPSQPSGKS EVSDLKTQLR QLAGSRAPGV DDSKRDLYKK VISYMTIGID VSSVFGEMVM CSATSDIVLK KMCYLYVGNY AKGNPDLSLL
101: TINFLQRDCK DEDPMIRGLA LRSLCSLRVP NLVEYLVGPL GSGLKDNNSY VRTIAVTGVL KLYHISPSTC IDADFPATLK SLMLHDSDAQ VVANCLSALQ
201: EIWSLEASHS EEACREKESL LSKPVIYYFL NRIKEFNEWA QCLILELAVK YVPSDSNDIF DIMNLLEDRL QHANGAVVLA TVKVFLQLTL SMTDVHQQVY
301: ERIKSPLLTL VSSGSPEQSY AILSHLHLLV VRAPFIFAAD YKHFYCQYNE PSYVKKLKLE MLTAVANESN TYEIVTELCE YAANVDIAIA RESIRAVGKI
401: ALQQYDVNAI VDRLLQFLEM EKDYVTAETL VLVKDLLRKY PQWSHDCISV VGGISSKNIQ EPKAKAALIW MLGEYAQDMS DAPYVLENLI ENWEEEHSAE
501: VRLHLLTAAM KCFFKRAPET QKALGTALAA GIADFHQDVH DRALFYYRVL QYDVHVAERV VSPPKQAVSV FADTQSSEIK DRVFDEFNSL SVIYQKPSYM
601: FTDKEHRGPF EFSDEVGNIS ITPEASSDIV PAQQYEANDK DLLLGIDEKD ENKGVSNNNG SAYTAPSLES SSNITSQMQE LAISGPATSA TTPQSFGFDD
701: LFGLGLSTAP APTPSPPLLK LNARAALDPG AFQQKWRQLP ISLTQECSVN PQGIAALTVP QSLIKHMQSH SIHCIASGGQ SPNFKFFFFA QKESEPSNYL
801: TECIINTSSA KAQIKVKADE QSTCQAFTTV FETALSKFGM P

Arabidopsis Description

Beta-adaptin-like protein [Source:UniProtKB/TrEMBL;Acc:F4JXV9]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.