Factsheet for PGSC0003DMT400076344

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g043030.2.1	Tomato	cytosol, peroxisome, plastid	83.1	46.66
TraesCS3B01G600100.1	Wheat	cytosol, golgi, mitochondrion, nucleus	41.63	41.96
TraesCS3B01G599800.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	38.34	41.67
GSMUA_Achr10P...	Banana	extracellular, plasma membrane	45.7	41.01
VIT_13s0019g01530.t01	Wine grape	cytosol	54.77	30.7
KRH73041	Soybean	cytosol, peroxisome, plastid	53.83	30.44
KRH15094	Soybean	cytosol, peroxisome, plastid	53.52	30.27
Os01t0973300-01	Rice	cytosol	43.66	30.1
CDY40224	Canola	cytosol, plasma membrane, plastid	47.1	27.56
CDY41227	Canola	cytosol	46.79	27.36
AT3G55480.2	Thale cress	cytosol, plasma membrane, plastid	46.79	26.82
TraesCS3A01G530000.1	Wheat	cytosol	44.44	26.15
TraesCS3D01G535400.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	44.6	25.89
TraesCS3B01G599600.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	44.6	25.84
EES13267	Sorghum	cytosol	43.51	25.25
Bra007167.1-P	Field mustard	cytosol	38.5	24.6
Zm00001d035093_P002	Maize	plastid	43.51	24.34
HORVU3Hr1G115880.4	Barley	cytosol, plastid	44.44	24.11
GSMUA_Achr7P15120_001	Banana	cytosol, mitochondrion, plasma membrane, plastid	20.19	18.12
PGSC0003DMT400031784	Potato	cytosol	13.62	9.74
PGSC0003DMT400037585	Potato	cytosol	9.23	7.02
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.5.2	InterPro:AP3B_C	InterPro:AP3_beta	InterPro:AP_beta	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	InterPro:IPR011989
UniProt:M1CWK0	PFAM:PF01602	PFAM:PF14796	EnsemblPlantsGene:PGSC0003DMG400029682	PGSC:PGSC0003DMG400029682	EnsemblPlants:PGSC0003DMT400076344
PANTHER:PTHR11134	PANTHER:PTHR11134:SF1	SMART:SM01355	SUPFAM:SSF48371	UniParc:UPI000294AC4D	SEG:seg

Description

AP3-complex subunit beta-A [Source:PGSC_GENE;Acc:PGSC0003DMG400029682]

Coordinates

chr6:-:23932146..23938492

Molecular Weight (calculated)

70943.8 Da

IEP (calculated)

5.066

GRAVY (calculated)

-0.179

Length

639 amino acids

Sequence
(BLAST)

001: MDEEAIILIQ AINSIKTIIK HEHSSHDKVI VHLARKLDSI RVPSARAMII WMLGEYNSMG HIIPKVLPTV LKYLAWTFSS EALETKLQIL NAMVKVLLHA
101: EGEALSTFKT LLNYVLELAK CDLNYDIRDR GRLLQKLLSH YIGTHELEES PPDSTLHVLT GHLFGREIKP IPSEPLAYRF YLPGSLSQMV LHAAPGYEPL
201: PQPLSLICND TTHEPNMVIG MKQPGNGATQ SESYETDDAD TVSGSLNEES TSGYNSQDSR TGSSGTHGSH RSGSVSDDDE HAGPLIHLSD SGNAHGNQLG
301: PRFNQNSDSN DLGELMSIKS LESWLDDNPG STHNSVELNN VCQSLARISI GDLSSRVKPK SYTLLDPANG NGLSVEYIFS SEVSSISPLL VCIQVIFTNN
401: SVEAMSNIQL IEEDSGMRVE SSDHVLTSDE SSKMSVNDVP TLVPMEEITK LERGQVMQRT LQVWFHHHLL PLKLLLWCNG KKYPVKLRPD IGYFVKPLPM
501: EIDMFSIKES QLPGMFEYIR RCTFIDHIEE LNKLESPLAK DNFLVICETL ALKVLSNSNL FHLSVDMPVG TDLDDASGLQ LRFSGEILSN SIPCLITITV
601: EGRCSEPLDS KVKVNCEETV FGLNFLNRVV NFLTEPARL

Best Arabidopsis Sequence Match ( AT3G55480.2 )
(BLAST)

0001: MFNKFGSTSE TLSKASAGLL RIGTDAHLYD DPEDVNIAPL LDSKFESEKC EALKRLLALI AQGFDVSNFF PQVVKNVASQ SSEVKKLVYL YLLQYAEKRP
0101: NEALLSINYF QKDLGDPNPL VRAWALRTMA GIRLHVIAPL ALAAVSKCAR DPAVYVRRCA ANALPKLHDL RLEEHASAIE ELVGILLNDH SPGVVGAAAA
0201: AFTSICPNNF KLIGKNYKKL CQILPDVEEW GQILLIGTLL RYVVARHGLV RESLMLSIHG TNSNGFCEKD GLGRDLTLDK EDGGKSDSFD VNLVSLVSKC
0301: YIQGPDEYLS RSSCTDTVSS AFDTKETTSI AHNEDVKILL QCTSPLLWSN NSAVVLAAAG VQWIMAPLED VKKIVKPLLF LLRSSSASKY VVLCNILVFA
0401: KAVPSLFAPH FENFFICSSD AYQVKAYKLE MLSLIATTSS IASILREFED YIKDPDRRFA ADTVAAIGLC AKRLMTIPTT CLDGLLALVR QESFAGDFES
0501: ADGEAGVLVQ AVMSIQTMIE RDPLRHEKVL IQLFRSLDSI KVAAARATII WMVGVYCSLG HIIPRMLTTI TKYLAWSFKS EASETKLQIL NTIAKVLISA
0601: EAGDFHMLKR IVVYVFELGE YDLSYDIRDR TRFLKKLLSC KLASHEPAED SVASQENIAA HVVEHVFGRK LKSVSPITLH NRFYLPGSLS QIVLHAAPGY
0701: EPLPKPCSFV YEEQDQLSDL DKQREAAADL DGSEESSETG DENGSSDYDS ESSNGSDFSS EGDERTVSND ANDPAAPLIQ ISETSVSADQ EELRSRRALD
0801: LWLDDQPSTS NQTPSALNSN QSSYAKISIG DVGSRVKPKS YSLVDPGNGS GLKVDYAFLS EVSNVSPLHV CVEVLFENSS AEPILEVNLE DEESMKVADS
0901: SEQTLVGKAN ASYNNIPTLI PMEEISCLEP HQSTKRLIQV RFHHHLLPMR LTLHYNEKKV PVKLRPDLGY LVKPFSMSIE EFLATESRLP GMFEYSRRCT
1001: FDDHVKDSRT ENGKDKFLSI CESITLKVLS NSNLHLVSVD LPVANSLEDA TGLRLRFSSK ILSSEIPLLI TITVEGKCTE VLNLTVKINC EETVFGLNLL
1101: NRIANFMVEP SSSAT

Arabidopsis Description

PAT2AP-3 complex subunit beta [Source:UniProtKB/TrEMBL;Acc:F4IWW1]
SUBAcon: [plasma membrane,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.