Factsheet for Solyc11g066770.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g032050.2.1
Solyc03g096000.2.1	plasma membrane
Solyc04g081410.2.1	golgi
Solyc05g052510.2.1	plasma membrane
Solyc06g051310.2.1	plasma membrane
Solyc07g049380.1.1
Solyc08g081320.2.1
Solyc10g078790.1.1
Solyc11g068640.1.1
Solyc12g006000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc11g068640.1.1	AT3G01780.1	24529374
AT5G22770.1	Solyc03g096000.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc05g052510.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc06g051310.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc08g081320.2.1	AT4G23460.1	23975899
AT5G22770.1	Solyc10g078790.1.1	AT5G57460.1	24529374
AT5G22770.1	Solyc03g032050.2.1	AT5G65960.1	23975899
AT5G22780.1	Solyc07g049380.1.1	AT1G05020.1	15054111
AT5G22780.1	Solyc12g006000.1.1	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0112400-01	Rice	cytosol	23.27	66.01
CDY20344	Canola	cytosol	68.2	45.89
Solyc06g074650.2.1	Tomato	plastid	79.03	33.73
VIT_06s0061g01170.t01	Wine grape	cytosol	77.65	33.2
KRH22743	Soybean	cytosol, endoplasmic reticulum	77.42	32.94
KRH26563	Soybean	endoplasmic reticulum	77.19	32.84
CDY29719	Canola	cytosol	68.89	30.48
Bra002427.1-P	Field mustard	cytosol	68.43	29.49
CDX92339	Canola	cytosol	68.43	29.49
Bra037603.1-P	Field mustard	cytosol	68.89	29.49
CDY26951	Canola	cytosol	68.43	29.46
AT5G22770.1	Thale cress	cytosol	68.43	29.35
AT5G22780.1	Thale cress	cytosol	68.43	29.32
GSMUA_Achr1P01770_001	Banana	cytosol	67.97	28.78
GSMUA_Achr5P15250_001	Banana	cytosol	65.44	28.6
KXG40365	Sorghum	cytosol	62.9	26.15
Zm00001d027333_P018	Maize	cytosol	61.29	24.91
Zm00001d048511_P008	Maize	cytosol	60.83	24.79
TraesCS4B01G395700.3	Wheat	cytosol, unclear	59.45	24.78
TraesCS5A01G557300.1	Wheat	cytosol	59.22	24.66
HORVU4Hr1G089310.1	Barley	cytosol	55.99	22.88
Solyc04g025870.2.1	Tomato	plastid	12.67	6.27
Solyc05g005780.2.1	Tomato	nucleus	12.21	6.03
Solyc08g075310.2.1	Tomato	cytosol	9.22	4.13
Solyc03g119270.1.1	Tomato	nucleus	7.14	3.2
Solyc11g066760.1.1	Tomato	cytosol	1.15	1.07
CDY20343	Canola	cytosol	0.69	0.96
GSMUA_Achr5P15260_001	Banana	cytosol	0.0	0.0
Os03t0112101-00	Rice	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:2.60.40.1230	Gene3D:3.30.310.10	MapMan:35.1	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf
InterPro:Coatomer/calthrin_app_sub_C	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131
InterPro:IPR012295	UniProt:K4D9T4	PFAM:PF02296	PFAM:PF02883	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4
SMART:SM00809	SUPFAM:SSF49348	SUPFAM:SSF55711	EnsemblPlantsGene:Solyc11g066770.1	EnsemblPlants:Solyc11g066770.1.1	InterPro:TBP_dom_sf
UniParc:UPI000276A148	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:+:52559178..52562555

Molecular Weight (calculated)

46909.1 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.143

Length

434 amino acids

Sequence
(BLAST)

001: MDILSEMPKF PERQSSLIKK AEDTETDTAD QSAIKLRAQQ QNSNALVVTD QHHANGTPPV NQLGPVKVPS TSNVDCDSVD QREAQSNGTL TIVDPQPPSS
101: ASPDLLGDLL SPLAIEGPHS AENQSNHSLS AGVEGAAIVE EALALAPIEE QMNTIQPIGS IAERFHALCF KDSGVLYEDP YIQIGSKADW RAHHGRLVLF
201: LGNKNTAPLA SVQAIILSPS HLRTELSLVP ETIPPRAQVQ CPLEVVNLRP SRDVAVLDFS YKFGTHLVNV KLRLPAVLNK FFQPITVAAE EFFPQWRSLS
301: GPPLKLQEVV RGVRPMALLE MANLFNSFQL IVCPGLDPNP NNLVASTTFY SESTRAMLCL VRIETDPADR TQLRMTVASG DPALTFELKE FVKEQLVSIP
401: TAARAAAPPV PPQPQPTSPP PPTSDPGALL AGLL

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.