Factsheet for Solyc11g066760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g032050.2.1
Solyc03g096000.2.1	plasma membrane
Solyc04g081410.2.1	golgi
Solyc05g052510.2.1	plasma membrane
Solyc06g051310.2.1	plasma membrane
Solyc07g049380.1.1
Solyc08g081320.2.1
Solyc10g078790.1.1
Solyc11g068640.1.1
Solyc12g006000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc04g081410.2.1	AT1G47830.1	23975899
AT5G22770.1	Solyc11g068640.1.1	AT3G01780.1	24529374
AT5G22770.1	Solyc03g096000.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc05g052510.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc06g051310.2.1	AT3G11130.1	23975898
AT5G22770.1	Solyc08g081320.2.1	AT4G23460.1	23975899
AT5G22770.1	Solyc10g078790.1.1	AT5G57460.1	24529374
AT5G22770.1	Solyc03g032050.2.1	AT5G65960.1	23975899
AT5G22780.1	Solyc07g049380.1.1	AT1G05020.1	15054111
AT5G22780.1	Solyc12g006000.1.1	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0112101-00	Rice	plasma membrane	66.81	80.0
CDY20343	Canola	cytosol	52.25	78.21
GSMUA_Achr5P15260_001	Banana	cytosol	16.7	59.54
Solyc06g074650.2.1	Tomato	plastid	94.86	43.56
VIT_06s0061g01170.t01	Wine grape	cytosol	93.36	42.96
KRH26563	Soybean	endoplasmic reticulum	93.58	42.84
KRH22743	Soybean	cytosol, endoplasmic reticulum	93.58	42.84
AT5G22770.1	Thale cress	cytosol	92.51	42.69
Bra002427.1-P	Field mustard	cytosol	91.86	42.6
CDX92339	Canola	cytosol	91.86	42.6
CDY26951	Canola	cytosol	91.86	42.56
AT5G22780.1	Thale cress	cytosol	92.08	42.45
Bra037603.1-P	Field mustard	cytosol	90.79	41.81
GSMUA_Achr1P01770_001	Banana	cytosol	90.15	41.07
TraesCS4B01G395700.3	Wheat	cytosol, unclear	88.65	39.77
TraesCS5A01G557300.1	Wheat	cytosol	88.65	39.73
KXG40365	Sorghum	cytosol	88.65	39.66
HORVU4Hr1G089310.1	Barley	cytosol	88.65	38.98
Zm00001d048511_P008	Maize	cytosol	88.22	38.69
Zm00001d027333_P018	Maize	cytosol	88.44	38.67
CDY29719	Canola	cytosol	76.02	36.19
GSMUA_Achr5P15250_001	Banana	cytosol	71.09	33.43
CDY20344	Canola	cytosol	25.05	18.14
Solyc05g005780.2.1	Tomato	nucleus	31.26	16.61
Solyc04g025870.2.1	Tomato	plastid	30.62	16.31
Solyc08g075310.2.1	Tomato	cytosol	24.41	11.78
Solyc03g119270.1.1	Tomato	nucleus	20.56	9.9
Solyc11g066770.1.1	Tomato	cytosol	1.07	1.15
Os03t0112400-01	Rice	cytosol	0.21	0.65

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.3.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
InterPro:IPR011989	UniProt:K4D9T3	PFAM:PF01602	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SUPFAM:SSF48371
EnsemblPlantsGene:Solyc11g066760.1	EnsemblPlants:Solyc11g066760.1.1	UniParc:UPI000276A147	:	:	:

Description

No Description!

Coordinates

chr11:+:52552982..52558747

Molecular Weight (calculated)

53422.2 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.039

Length

467 amino acids

Sequence
(BLAST)

001: MNFGLTPYEK KKYVWKMLYI HMLGYDVDFG HMEAVSLISA PKYPEKQVGY IVTSCLLNEN HDFLRLAINT VRNDIVGRNE TFQCLALTLV GNIGGREFAE
101: SLAPDVQKLL ISSSCRPLVR KKAALCLVRL FRKNPDVMNV DSWSDRMAQL LDERDLGVVT SSMSLLVALV SNNHEEYWSC LPKCVKVLER LSRNQDVPQE
201: YTYYGIPSPW LQVKAMRALQ YFPTIEDPDT RRSLFEVLQR ILMGTDVVKN VNKNNASHAV LFEALALVMH LDAEKEMMSQ CVALLGKFIA VREPNIRYLG
301: LENMTRMLMV TDVQDIIKRH QAQIITSLKD PDISIRRRAL DLLYGMCDVS NAKDIVEELL QYLSTAEFVM REELSLKIAI LAEKFAPDLS WYVDVILQLI
401: DKAGDFVSDD IWFRVVQFVT NNEDLQPYAA LKAREYLDKP AIHETMVKVS AYILGEIQPS SGQKAWM

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.