CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15260_001	Banana	cytosol	36.22	86.26
Os03t0112101-00	Rice	plasma membrane	86.86	69.49
Solyc11g066760.1.1	Tomato	cytosol	78.21	52.25
CDX91727	Canola	mitochondrion	12.82	33.33
Bra037603.1-P	Field mustard	cytosol	98.4	30.28
CDY29719	Canola	cytosol	94.87	30.17
CDX92339	Canola	cytosol	92.63	28.7
CDY26951	Canola	cytosol	92.63	28.67
VIT_06s0061g01170.t01	Wine grape	cytosol	91.67	28.18
KRH22743	Soybean	cytosol, endoplasmic reticulum	91.67	28.04
KRH26563	Soybean	endoplasmic reticulum	91.67	28.04
Solyc06g074650.2.1	Tomato	plastid	91.03	27.93
GSMUA_Achr1P01770_001	Banana	cytosol	87.82	26.73
KXG40365	Sorghum	cytosol	88.14	26.34
TraesCS4B01G395700.3	Wheat	cytosol, unclear	87.82	26.32
TraesCS5A01G557300.1	Wheat	cytosol	87.82	26.3
HORVU4Hr1G089310.1	Barley	cytosol	87.82	25.8
Zm00001d048511_P008	Maize	cytosol	87.82	25.73
Zm00001d027333_P018	Maize	cytosol	87.82	25.66
GSMUA_Achr5P15250_001	Banana	cytosol	50.96	16.01
CDY70074	Canola	cytosol	24.36	12.03
CDY25807	Canola	mitochondrion	32.37	11.54
CDY59088	Canola	mitochondrion	32.05	11.47
CDY47649	Canola	mitochondrion	32.05	11.47
CDY28466	Canola	mitochondrion	32.05	11.44
CDY04318	Canola	cytosol, nucleus, plastid	23.4	9.09
CDX84997	Canola	cytosol	25.0	8.97
CDY24454	Canola	cytosol	24.36	8.9
CDY68338	Canola	nucleus	23.72	8.71
CDX92225	Canola	cytosol, nucleus, plastid	23.72	8.64
CDY42099	Canola	cytosol	25.0	8.26
CDY33619	Canola	mitochondrion	5.77	3.96
CDY24514	Canola	cytosol	1.6	2.48
CDY20344	Canola	cytosol	2.88	1.4
Solyc11g066770.1.1	Tomato	cytosol	0.96	0.69
Os03t0112400-01	Rice	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.3.1	GO:A0A078G6S5	UniProt:A0A078G6S5	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY20343	ProteinID:CDY20343	ProteinID:CDY20343.1	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	EnsemblPlantsGene:GSBRNA2T00012317001
InterPro:IPR011989	PFAM:PF01602	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SUPFAM:SSF48371	UniParc:UPI0004EE7D83
SEG:seg	:	:	:	:	:

Description

BnaC01g23970DBnaC01g23970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6S5]

Coordinates

chrLK032106:+:336475..338911

Molecular Weight (calculated)

35481.3 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.187

Length

312 amino acids

Sequence
(BLAST)

001: MSGMRGLSVF ISDIRNCQNK EAERLRVDKE LGNIRTCFKN DKGLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
101: DFLRLAINAV RNDIIGRNET YQCLALTLVG NIGGREFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDVVNAD GWADRMAQLL DERDLGVLTS
201: SMSLLVSLVS NDYEGYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKTMRALQY FPTIEDPSTR RSLFEVLQRI LMGTDVVKNV NKNNASHAVL
301: FEALSLVRFP GR

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.