Factsheet for GSMUA_Achr1P01770_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P24200_001
GSMUA_Achr2P11020_001
GSMUA_Achr2P18700_001
GSMUA_Achr3P27960_001
GSMUA_Achr4P29710_001
GSMUA_Achr6P17830_001
GSMUA_Achr7P02300_001
GSMUA_Achr8P19280_001	golgi
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr10P...	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr6P17830_001	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr1P24200_001	AT4G23460.1	23975899
AT5G22770.1	GSMUA_AchrUn_...	AT4G23460.1	23975899
AT5G22770.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374
AT5G22770.1	GSMUA_Achr2P11020_001	AT5G65960.1	23975899
AT5G22770.1	GSMUA_Achr4P29710_001	AT5G65960.1	23975899
AT5G22780.1	GSMUA_Achr2P18700_001	AT1G05020.1	15054111
AT5G22780.1	GSMUA_Achr7P02300_001	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0112101-00	Rice	plasma membrane	36.0	94.62
GSMUA_Achr5P15260_001	Banana	cytosol	11.9	93.13
Solyc11g066760.1.1	Tomato	cytosol	41.07	90.15
CDY20343	Canola	cytosol	26.73	87.82
VIT_06s0061g01170.t01	Wine grape	cytosol	84.49	85.32
Solyc06g074650.2.1	Tomato	plastid	80.88	81.51
KXG40365	Sorghum	cytosol	82.54	81.03
GSMUA_Achr5P15250_001	Banana	cytosol	77.17	79.66
TraesCS4B01G395700.3	Wheat	cytosol, unclear	80.0	78.77
TraesCS5A01G557300.1	Wheat	cytosol	79.9	78.6
Zm00001d027333_P018	Maize	cytosol	81.56	78.28
Zm00001d048511_P008	Maize	cytosol	81.27	78.22
AT5G22780.1	Thale cress	cytosol	76.59	77.49
Bra002427.1-P	Field mustard	cytosol	76.0	77.36
CDX92339	Canola	cytosol	76.0	77.36
CDY26951	Canola	cytosol	76.0	77.28
AT5G22770.1	Thale cress	cytosol	76.29	77.27
Bra037603.1-P	Field mustard	cytosol	76.39	77.22
HORVU4Hr1G089310.1	Barley	cytosol	78.24	75.52
CDY29719	Canola	cytosol	69.85	72.99
CDY20344	Canola	cytosol	43.8	69.61
Os03t0112400-01	Rice	cytosol	10.24	68.63
Solyc11g066770.1.1	Tomato	cytosol	28.78	67.97
KRH25154	Soybean	cytosol	24.49	61.67
GSMUA_Achr10P...	Banana	mitochondrion	9.76	29.67
GSMUA_Achr9P18340_001	Banana	mitochondrion	20.98	24.91
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	20.59	24.45
GSMUA_Achr8P08830_001	Banana	cytosol	15.41	19.17
GSMUA_Achr11P...	Banana	cytosol	16.29	17.94
GSMUA_Achr10P...	Banana	cytosol	6.05	16.89
GSMUA_Achr4P06740_001	Banana	cytosol, plastid	10.34	14.85
GSMUA_Achr4P13750_001	Banana	nucleus, plastid	10.93	14.05

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	InterPro:AP2_complex_asu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C
ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886
GO:GO:0006897	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	EnsemblPlantsGene:GSMUA_Achr1G01770_001	EnsemblPlants:GSMUA_Achr1P01770_001
EnsemblPlants:GSMUA_Achr1T01770_001	InterPro:IPR011989	InterPro:IPR012295	UniProt:M0RW85	PFAM:PF01602	PFAM:PF02296
PFAM:PF02883	PIRSF:PIRSF037091	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371
SUPFAM:SSF49348	SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI000295288C	SEG:seg	:

Description

AP-2 complex subunit alpha-2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G01770_001]

Coordinates

chr1:+:1416952..1448557

Molecular Weight (calculated)

114453.0 Da

IEP (calculated)

5.891

GRAVY (calculated)

-0.088

Length

1025 amino acids

Sequence
(BLAST)

0001: MALSGMRGLS VFISDVRNCQ NKEQERLRVD KELGNIRTRF KNEKGLSPYE KKKYVWKMLY IYMLGYDVDF GHTEAVSLIS APKYPEKQVG YIVTSCLLNE
0101: NHDFLRMVIN TVRNDIVGRN ETFQCLALTM VGNIGGKEFS ESLAPDVQKL LISSSCRPLV RKKAALCLLR LYRKNPDVVN VDGWSDRMSQ LLDERDLGVL
0201: TSVMSLFVAL VSSNIEAYWN CLPKCVKILE RLARNQDVPQ EYTYYGIPSP WLQVKTMRAL QYFPTIEDPN TRRALFEVLQ RILMGTDVVK NVNKNNAAHA
0301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMTRMLL VSDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDV TNAKDIVEEL
0401: LQYLNTADFV MREELALKAA ILAEKFAPDL SWYVDVILQL IDKAGDFVSD DIWYRVVQFV TNNEDLQPYA AAKAREYLEK PALHETMVKV SAYLLGEYSH
0501: LLARRPGCSP KEIFAIINEK LPTVATSTVA ILLSTYAKIL MHNLPPDPEL QEQIWSIFRK YESYIDVEIQ QRAVEYFSLS RKGAALVDVL AEMPKFPERQ
0601: SALLKKAEDA EVDTAEQSAI KIRSQQQTSN ALVVTDQRPA NGSLPVSQLG LVRMPSQNME ASTQGQASSR EQGMTDENGS INKVVPQDAP SADLLGDLLG
0701: PLAIEGPQVP TVPGEQKDKN LLSALEATPE EAGPLALATV DDQPNSVQPI VNIAERFNAL CLKDSGVLYE DPHIQIGIKA EWRAHHGRLV LFLGNKNTSP
0801: LVSVRALILP PTNLKMELSM VPETIPPRAQ VQCPLEVVNL QASRDLAVLD FSYKFGTAVV NVKLRLPVVL NKFLQPILVS AEEFFPQWKS LSGPPLKLQE
0901: VLRGVKPLSL PEMANLFTSL HLAVTPGIDA NPNNLVACTT FYSESTRAML CLIRVETDPS DRTQLRITIA SGDPTLTFEL KECIKEHLVS IPMQTPPPAV
1001: SPVQPQSPVT PAAYNDPGAM LAGLL

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.