Factsheet for Zm00001d027333_P018

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002538_P001
Zm00001d004784_P001
Zm00001d004785_P001
Zm00001d007270_P001	golgi
Zm00001d007683_P001
Zm00001d008959_P001
Zm00001d010979_P001
Zm00001d018154_P001
Zm00001d021067_P001	plasma membrane
Zm00001d024416_P001
Zm00001d029196_P002
Zm00001d030865_P001
Zm00001d032260_P001
Zm00001d041778_P006	golgi
Zm00001d043645_P001
Zm00001d047464_P024
Zm00001d049633_P002
Zm00001d053028_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Zm00001d007270_P001	AT1G47830.1	23975899
AT5G22770.1	Zm00001d041778_P006	AT1G47830.1	23975899
AT5G22770.1	Zm00001d007270_P001	AT1G47830.1	23975899
AT5G22770.1	Zm00001d041778_P006	AT1G47830.1	23975899
AT5G22770.1	Zm00001d004784_P001	AT3G01780.1	24529374
AT5G22770.1	Zm00001d004785_P001	AT3G01780.1	24529374
AT5G22770.1	Zm00001d053028_P001	AT3G01780.1	24529374
AT5G22770.1	Zm00001d021067_P001	AT3G11130.1	23975898
AT5G22770.1	Zm00001d018154_P001	AT4G23460.1	23975899
AT5G22770.1	Zm00001d029196_P002	AT4G23460.1	23975899
AT5G22770.1	Zm00001d030865_P001	AT4G23460.1	23975899
AT5G22770.1	Zm00001d032260_P001	AT4G23460.1	23975899
AT5G22770.1	Zm00001d047464_P024	AT4G23460.1	23975899
AT5G22770.1	Zm00001d024416_P001	AT5G57460.1	24529374
AT5G22770.1	Zm00001d002538_P001	AT5G65960.1	23975899
AT5G22770.1	Zm00001d007683_P001	AT5G65960.1	23975899
AT5G22770.1	Zm00001d008959_P001	AT5G65960.1	23975899
AT5G22770.1	Zm00001d010979_P001	AT5G65960.1	23975899
AT5G22770.1	Zm00001d043645_P001	AT5G65960.1	23975899
AT5G22770.1	Zm00001d049633_P002	AT5G65960.1	23975899

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0112101-00	Rice	plasma membrane	35.86	98.21
KXG40365	Sorghum	cytosol	94.1	96.26
Zm00001d048511_P008	Maize	cytosol	94.57	94.84
GSMUA_Achr5P15260_001	Banana	cytosol	11.24	91.6
Solyc11g066760.1.1	Tomato	cytosol	38.67	88.44
CDY20343	Canola	cytosol	25.66	87.82
TraesCS5A01G557300.1	Wheat	cytosol	84.93	87.04
TraesCS4B01G395700.3	Wheat	cytosol, unclear	84.83	87.03
HORVU4Hr1G089310.1	Barley	cytosol	83.24	83.71
GSMUA_Achr1P01770_001	Banana	cytosol	78.28	81.56
VIT_06s0061g01170.t01	Wine grape	cytosol	76.03	80.0
Os03t0112400-01	Rice	cytosol	11.24	78.43
Solyc06g074650.2.1	Tomato	plastid	73.88	77.58
CDY26951	Canola	cytosol	70.97	75.2
CDX92339	Canola	cytosol	70.88	75.17
Bra002427.1-P	Field mustard	cytosol	70.88	75.17
Bra037603.1-P	Field mustard	cytosol	71.35	75.15
AT5G22780.1	Thale cress	cytosol	71.25	75.12
AT5G22770.1	Thale cress	cytosol	70.79	74.7
CDY29719	Canola	cytosol	65.07	70.85
GSMUA_Achr5P15250_001	Banana	cytosol	64.51	69.39
CDY20344	Canola	cytosol	39.98	66.2
Solyc11g066770.1.1	Tomato	cytosol	24.91	61.29
KRH25154	Soybean	cytosol	23.31	61.18
Zm00001d045195_P002	Maize	cytosol	20.04	24.68
Zm00001d036305_P003	Maize	mitochondrion	20.22	23.84
Zm00001d051998_P003	Maize	cytosol	19.66	23.31
Zm00001d025314_P001	Maize	cytosol	3.37	22.36
Zm00001d012061_P005	Maize	cytosol	16.48	18.05
Zm00001d042370_P003	Maize	cytosol	15.64	17.2
Zm00001d041626_P001	Maize	plastid	12.36	14.03
Zm00001d023820_P001	Maize	mitochondrion	12.08	13.93

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100280063	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	UniProt:A0A1D6JKY6
InterPro:AP2_complex_asu	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005905
GO:GO:0006810	GO:GO:0006886	GO:GO:0006897	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131	GO:GO:0035615	GO:GO:0072583
InterPro:IPR011989	InterPro:IPR012295	ProteinID:ONL92845.1	PFAM:PF01602	PFAM:PF02296	PFAM:PF02883
PIRSF:PIRSF037091	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI0008447311	EnsemblPlantsGene:Zm00001d027333	EnsemblPlants:Zm00001d027333_P018	EnsemblPlants:Zm00001d027333_T018
SEG:seg	:	:	:	:	:

Description

AP-2 complex subunit alpha-2

Coordinates

chr1:+:3104215..3122715

Molecular Weight (calculated)

119669.0 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.149

Length

1068 amino acids

Sequence
(BLAST)

0001: MALSGMRGLS VFISDIRNCH NKEQERLRVD KELGNIRTRF KNEKGLSPYE KKKYVWKMLY IYMLGYDVDF GHMETVSLIS APKYPEKQVG YIVTSCLLNE
0101: NNDFLRMVIN TVRNDIIGRN ETFQCLALTM VGNIGGKEFS ESLAPDVQKL LISSSCRPVV RKKAALCLLR LYRKNPDVVN IDGWADRMAQ LLDERDLGVL
0201: TSVTSLFVSL VSNNVEAYWN CLPKCVRILE RLARNQDIPQ EYTYYGIPSP WLQVKTMRAL QYFPTIEDPN ARRALFEVLQ RILMGTDVVK NVNKNNASHA
0301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMTRMLL VTDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDV TNAKEIVEEL
0401: LQYLDTAEFA MREELSLKAA ILAEKFAPQL LWYVDVILQL IDKAGDFVSD DIWYRVVQFV TNNEDLQSYA ATKAREYLDK PALHETMVKV SAYLLGEYGH
0501: LLARRPGCSP KELFAIINDK LPTVSASTVA ILLSTYAKIL MHTQPPDVGL QQQILTIFKK YESYIDVEIQ QRAVEYFELS RKGPALADVL AEMPKFPERE
0601: SALLKKAEDA EIDTAEQSAI KLRSQQQTSS ALVVADHPPA NGFAPPVNNL TLVKMPSQTV SDTQESGVSY EEAPKPPVEA PKENGTPVEV QNRDTNITEI
0701: NNEIKAEPPS TSHSTSPGDL LLADLLGPLA IEGPPAVEQN PAQGLNANQS PAGDLALATL DDQSNSVQPI VNVEEKFHIL CTKDSGVLYE DPYIQIGLKA
0801: EWRAHHGRLV LFLGNKNTSA LTSVRALILP PSHLKMELSS VPDTIPPRAQ VQVPLEVANL LASRDVAVLD FSYAFGTSLV DAKLRLPVVL NKFLQTITLT
0901: PEEFFSQWKA LTVHSLKVQE VVKGVKPMPL SEMANLFMSL HLAVAPGLDN NPNNLVACTT FFSEATRAML CLIRVETDPQ DRTQLRLTVA SGDQYLTFEL
1001: KEFIKEHLVD IPRTQVAPPR AAVQPQLPTT APATYNDPAS CCQDVHVEQP RKSWRSVVSM RILNRERA

Best Arabidopsis Sequence Match ( AT5G22770.2 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.