Factsheet for Zm00001d051998_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31353	Sorghum	cytosol	95.01	95.01
Os02t0805000-01	Rice	cytosol, plasma membrane	48.72	89.78
HORVU5Hr1G019420.1	Barley	cytosol	7.88	83.53
TraesCS6A01G373200.1	Wheat	mitochondrion	82.13	82.96
HORVU3Hr1G053020.1	Barley	cytosol	7.77	82.35
TraesCS6D01G357400.1	Wheat	golgi	81.8	82.16
TraesCS6B01G410900.2	Wheat	cytosol	80.91	81.36
GSMUA_Achr10P...	Banana	mitochondrion	30.08	80.42
Zm00001d045195_P002	Maize	cytosol	77.14	80.16
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.55	80.0
Zm00001d036305_P003	Maize	mitochondrion	79.02	78.59
HORVU6Hr1G087920.7	Barley	mitochondrion	83.8	75.27
CDX91727	Canola	mitochondrion	9.88	74.17
HORVU3Hr1G040310.1	Barley	cytosol	14.32	72.07
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	68.92	71.96
GSMUA_Achr9P18340_001	Banana	mitochondrion	68.81	71.84
VIT_01s0026g00310.t01	Wine grape	mitochondrion	66.04	67.77
KRH74623	Soybean	mitochondrion	64.71	66.93
KRH69527	Soybean	mitochondrion	64.71	66.78
CDY59088	Canola	mitochondrion	64.37	66.51
Bra024627.1-P	Field mustard	mitochondrion	64.26	66.4
CDY47649	Canola	mitochondrion	63.93	66.06
CDY25807	Canola	mitochondrion	63.93	65.83
CDY28466	Canola	mitochondrion	63.82	65.79
Bra012393.1-P	Field mustard	mitochondrion	63.82	65.79
AT1G23900.2	Thale cress	mitochondrion	63.93	65.75
Solyc04g025870.2.1	Tomato	plastid	63.93	65.68
HORVU7Hr1G050510.16	Barley	cytosol	11.88	65.24
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	63.6	65.19
Solyc05g005780.2.1	Tomato	nucleus	62.93	64.51
KRH45711	Soybean	cytosol, mitochondrion	62.93	64.36
AT1G60070.2	Thale cress	cytosol, mitochondrion	62.93	63.14
CDY24514	Canola	cytosol	14.1	62.87
CDY33619	Canola	mitochondrion	29.41	58.24
GSMUA_Achr10P...	Banana	cytosol	22.31	54.77
Bra031528.1-P	Field mustard	mitochondrion	11.88	49.08
KRG99303	Soybean	nucleus	6.99	35.0
Zm00001d025314_P001	Maize	cytosol	3.88	21.74
Zm00001d027333_P018	Maize	cytosol	23.31	19.66
Zm00001d048511_P008	Maize	cytosol	22.86	19.34
Zm00001d012061_P005	Maize	cytosol	18.98	17.54
Zm00001d042370_P003	Maize	cytosol	17.98	16.68
Zm00001d023820_P001	Maize	mitochondrion	15.21	14.79
Zm00001d041626_P001	Maize	plastid	15.32	14.67

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100381886	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu	ProteinID:AQK55703.1
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131
GO:GO:0031410	InterPro:IPR008153	InterPro:IPR011989	UniProt:K7U510	PFAM:PF01602	PFAM:PF02883
PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27	SMART:SM00809	SUPFAM:SSF48371
SUPFAM:SSF49348	UniParc:UPI00022138D0	EnsemblPlantsGene:Zm00001d051998	EnsemblPlants:Zm00001d051998_P003	EnsemblPlants:Zm00001d051998_T003	SEG:seg

Description

AP-1 complex subunit gamma-1

Coordinates

chr4:+:176207227..176221245

Molecular Weight (calculated)

98466.0 Da

IEP (calculated)

6.465

GRAVY (calculated)

-0.038

Length

901 amino acids

Sequence
(BLAST)

001: MDTVEKIVED FASDIAVSPF SSGTSLREMI RAIRACKTAA EERAVVRREC AAIRTAISEN EPELRHRNMA KLMFIHMLGY PTHFAQMECL KLIAAAGFPE
101: KRVGYLGLML LLDERQEVLM LVTNSLKQDL NHTNQFIVGL ALCALGNICS AEMARDLSPE VERLMRSREV NTKKKAALCS IRIVRKVPDL AENFMGLAAS
201: LLKEKHHGVL ISAIQLCTEL CKASKDSLEY LRKNCIEGLA RILRDVSNRS YAPEYDVSGI VDPFLHIRVL KLLRILGQGD ADCSEYMNDI LAQVATKTES
301: NKNAGNAILY ECVQTIMGIE ATSGLRVLAI NILGRFLSNR DNNIRYVALN MLMRAITVDA LAVQRHRTTI LECVKDADAS IRKRALELVY LLVNDTNVKP
401: LTKELIDYLN IADPDFIGDL TVNICSIVEK FSQEKLWYLD QMFNVLSLAG NHVKDDICHA LIVVLSNTSE LQGYSVRSLY KALQEYGKQG SLVRVAVWCI
501: GEYGEMLVNN VGMLDGEEPI KVTESDAVDA VEVALNRYSA DMTTGAMCLV ALLKLSSRFP LTSERIKQIV AQNKGNVVLE LQQRSIEFTS IIQRHQSIRS
601: SLLERMPVLD EASYLVKRAT ATQSTISADK IAPTVTPGSL KLPNGVAKPT SAPLADLLDF SSDGAPASTV ASTTTPNDFL QDLLGIGGVS SSTTGVTSTA
701: STDILMDLLS IGSSPSQNGT PVTDFRHPGQ ESKPVPGVPE AVDLLGSLSP AESKPTPVVP KDMDLLDGLS SNTSISGHEN TTHPSITAFQ SATLKITFDF
801: KMKLGNPRET TIHATFTNLT SSTFTDFIFQ AAVPKFIQLR LDPASGNTVP ANGSGSVTQG LNITNNQQGQ KPLAMRIRMS YKVNGEDRLE QGQVSNFPSG
901: L

Best Arabidopsis Sequence Match ( AT1G23900.1 )
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECADIRAL INEDDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHSNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIIRK VPDLAENFVN AAASLLKEKH HGVLITGVQL
201: CYELCTINDE ALEYFRTKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLRLLRVL GQGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTNSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TFDDQAVQRH RVTILECVKD PDASIRKRAL ELVTLLVNEN NVTQLTKELI DYLEISDEDF
401: KEDLSAKICF IVEKFSPEKL WYIDQMLKVL CEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKSVLTY SEQETLVRVA VWCIGEYGDL LVNNVGMLGI
501: EDPITVTESD AVDVIEDAIT RHNSDSTTKA MALVALLKLS SRFPSISERI KDIIVKQKGS LLLEMQQRAI EYNSIVDRHK NIRSSLVDRM PVLDEATFNV
601: RRAGSFPASV STMAKPSVSL QNGVEKLPVA PLVDLLDLDS DDIMAAPSPS GTDFLQDLLG VDLGSSSAQY GATQAPKAGT DLLLDILSIG TPSPAQNSTS
701: SIGLLSIADV NNNPSIALDT LSSPAPPHVA TTSSTGMFDL LDGLSPSPSK EATNGPAYAP IVAYESSSLK IEFTFSKTPG NLQTTNVQAT FTNLSPNTFT
801: DFIFQAAVPK FLQLHLDPAS SNTLLASGSG AITQNLRVTN SQQGKKSLVM RMRIGYKLNG KDVLEEGQVS NFPRGL

Arabidopsis Description

GAMMA-ADRAP-1 complex subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84K16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.