Factsheet for PGSC0003DMT400010532

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
plasma membrane 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005780.2.1	Tomato	nucleus	98.29	98.29
CDX91727	Canola	mitochondrion	11.04	80.83
VIT_01s0026g00310.t01	Wine grape	mitochondrion	80.66	80.75
KRH74623	Soybean	mitochondrion	79.41	80.14
KRH69527	Soybean	mitochondrion	79.18	79.73
GSMUA_Achr10P...	Banana	mitochondrion	29.12	75.96
KRH45711	Soybean	cytosol, mitochondrion	76.11	75.94
CDY59088	Canola	mitochondrion	73.38	73.97
CDY25807	Canola	mitochondrion	73.61	73.94
Bra012393.1-P	Field mustard	mitochondrion	73.49	73.91
CDY28466	Canola	mitochondrion	73.38	73.8
Bra024627.1-P	Field mustard	mitochondrion	73.15	73.74
CDY47649	Canola	mitochondrion	73.04	73.62
Os02t0805000-01	Rice	cytosol, plasma membrane	40.96	73.62
AT1G23900.2	Thale cress	mitochondrion	73.04	73.29
AT1G60070.2	Thale cress	cytosol, mitochondrion	73.95	72.38
HORVU5Hr1G019420.1	Barley	cytosol	6.83	70.59
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	69.17	70.45
CDY24514	Canola	cytosol	16.15	70.3
GSMUA_Achr9P18340_001	Banana	mitochondrion	68.26	69.52
HORVU3Hr1G053020.1	Barley	cytosol	6.71	69.41
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	6.71	69.41
HORVU7Hr1G027050.3	Barley	cytosol	68.26	69.04
TraesCS7D01G128900.2	Wheat	cytosol	67.8	68.51
TraesCS7A01G129800.3	Wheat	peroxisome	67.8	68.51
Os06t0167100-01	Rice	plasma membrane	67.69	68.39
TraesCS7B01G029800.2	Wheat	cytosol	67.58	68.28
KXG19397	Sorghum	cytosol, plastid	67.01	67.39
Zm00001d045195_P002	Maize	cytosol	65.98	66.9
TraesCS6A01G373200.1	Wheat	mitochondrion	66.33	65.36
Zm00001d036305_P003	Maize	mitochondrion	67.01	65.01
CDY33619	Canola	mitochondrion	33.56	64.84
TraesCS6D01G357400.1	Wheat	golgi	65.76	64.44
TraesCS6B01G410900.2	Wheat	cytosol	65.07	63.84
KXG31353	Sorghum	cytosol	65.42	63.82
Zm00001d051998_P003	Maize	cytosol	65.19	63.6
HORVU3Hr1G040310.1	Barley	cytosol	12.29	60.34
HORVU6Hr1G087920.7	Barley	mitochondrion	66.33	58.13
HORVU7Hr1G050510.16	Barley	cytosol	10.58	56.71
GSMUA_Achr10P...	Banana	cytosol	22.87	54.77
Bra031528.1-P	Field mustard	mitochondrion	13.42	54.13
KRG99303	Soybean	nucleus	8.3	40.56
PGSC0003DMT400014395	Potato	cytosol	17.52	15.88
PGSC0003DMT400004931	Potato	nucleus	5.35	11.3

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102585295	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:GAE_dom	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030121	GO:GO:0030131	GO:GO:0031410
InterPro:IPR008153	InterPro:IPR011989	UniProt:M0ZY73	PFAM:PF01602	PFAM:PF02883	EnsemblPlantsGene:PGSC0003DMG400004116
PGSC:PGSC0003DMG400004116	EnsemblPlants:PGSC0003DMT400010532	PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27
SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI000295061A	RefSeq:XP_006355968.1	SEG:seg

Description

AP-1 complex subunit gamma-2 [Source:PGSC_GENE;Acc:PGSC0003DMG400004116]

Coordinates

chr5:-:7645185..7664375

Molecular Weight (calculated)

96070.7 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.081

Length

879 amino acids

Sequence
(BLAST)

001: MNPFSSGTRL RDMIRAIRAS KTAAEERAVV RKECAAIRAA ISDNDHDYRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSI KQDLNHTNQY IVGLALCALG NIGSAEMARD LAPEVERLLK FRDPNIRKKA ALCSIRIIKK VPDLAENFIH AAASLLSEKH HGVLITGVQL
201: CIDLCKISTE ALEHFRKKCT DGLVKLMRDL ANSPYAPEYD VSGITDPFLQ IRLLRLLRSL GKDDADASDT MNDILAQVAT KTESNKNAGN AILYECVAAI
301: MSVEDNGGLR VLAINILGRF LSNRDNNIRY VALNMLMKAL AVDSQAVQRH RTTILECVKD SDPSIRKRAV ELVYLLVNES NVKPMTKELI EYLEASDPEF
401: RGDLTAKICS IVEKFSPEKI WYIDQMLKVL SEAGNDVKDE AWHSLIVVIT NASDLHGYAV RSLYRAVQAA GEQETLVRVA IWCIGEYGDM LVNNAGRLDI
501: EEPLTVTESD AVDVVETSFK SHSFDLTTRA MCLIALLKLS SRFPSCSQRI NDIIVQYKGS FVLELQQRAI EFNSIIGRHQ NIRPSLVERM PVLDEATHSG
601: RKAGSVPAAV STSQGVSVNL PNGVAKPSAA PLVDLLDLSS DDVPAPSSSG GDFLQDLLGV DLVPVSSQSG TNQAQMSGTN VLLDLLSIGT PPANSSPSTI
701: QVSPSNADTK SPVDLLDRLS SPSAPSVQVS TTAGSSPMLD LLNGFPSSSP IAVTEGNGPA YPSIVAFESS SLKLTFNFSK KPENPQTTLI EASFTNKSGE
801: VLTNFIFQAA VPKFLQLHLD PASGNMLPAN SSGSIMQKLK LTNSQHGKKS LVMRIRIAYK VNSKDVLEEG QVNNFPRDL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.