Factsheet for Bra012393.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plasma membrane 1
mitochondrion 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25807	Canola	mitochondrion	99.08	98.97
CDY28466	Canola	mitochondrion	98.51	98.51
Bra024627.1-P	Field mustard	mitochondrion	95.19	95.41
AT1G23900.2	Thale cress	mitochondrion	91.53	91.32
GSMUA_Achr10P...	Banana	mitochondrion	29.86	77.45
KRH74623	Soybean	mitochondrion	76.32	76.58
HORVU5Hr1G019420.1	Barley	cytosol	7.44	76.47
VIT_01s0026g00310.t01	Wine grape	mitochondrion	76.77	76.42
KRH69527	Soybean	mitochondrion	76.32	76.4
Os02t0805000-01	Rice	cytosol, plasma membrane	42.33	75.66
HORVU3Hr1G053020.1	Barley	cytosol	7.32	75.29
HORVU1Hr1G048590.1	Barley	cytosol, mitochondrion	7.32	75.29
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	73.91	73.49
Solyc05g005780.2.1	Tomato	nucleus	73.34	72.92
KRH45711	Soybean	cytosol, mitochondrion	73.23	72.64
Solyc04g025870.2.1	Tomato	plastid	72.88	72.63
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	67.96	68.83
Os06t0167100-01	Rice	plasma membrane	68.31	68.62
GSMUA_Achr9P18340_001	Banana	mitochondrion	67.62	68.48
HORVU7Hr1G027050.3	Barley	cytosol	67.51	67.89
Zm00001d045195_P002	Maize	cytosol	67.28	67.82
KXG19397	Sorghum	cytosol, plastid	67.51	67.51
TraesCS7B01G029800.2	Wheat	cytosol	67.16	67.47
TraesCS7D01G128900.2	Wheat	cytosol	66.82	67.13
TraesCS7A01G129800.3	Wheat	peroxisome	66.59	66.9
TraesCS6A01G373200.1	Wheat	mitochondrion	66.93	65.58
Zm00001d036305_P003	Maize	mitochondrion	67.51	65.12
TraesCS6D01G357400.1	Wheat	golgi	66.59	64.88
HORVU3Hr1G040310.1	Barley	cytosol	13.27	64.8
TraesCS6B01G410900.2	Wheat	cytosol	66.36	64.73
Zm00001d051998_P003	Maize	cytosol	65.79	63.82
KXG31353	Sorghum	cytosol	65.56	63.6
HORVU7Hr1G050510.16	Barley	cytosol	11.44	60.98
HORVU6Hr1G087920.7	Barley	mitochondrion	67.16	58.52
Bra031528.1-P	Field mustard	mitochondrion	13.5	54.13
GSMUA_Achr10P...	Banana	cytosol	21.28	50.68
KRG99303	Soybean	nucleus	8.12	39.44
Bra024739.1-P	Field mustard	cytosol	8.01	26.62
Bra037603.1-P	Field mustard	cytosol	25.4	21.89
Bra002427.1-P	Field mustard	cytosol	24.71	21.45
Bra023199.1-P	Field mustard	cytosol	20.37	18.98
Bra032266.1-P	Field mustard	nucleus	16.59	17.06
Bra022309.1-P	Field mustard	nucleus	16.25	16.59

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	InterPro:AP1_complex_gsu	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:Bra012393	EnsemblPlants:Bra012393.1	EnsemblPlants:Bra012393.1-P	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf
ncoils:Coil	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	InterPro:IPR008153	InterPro:IPR011989	UniProt:M4D7D3
PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780	PANTHER:PTHR22780:SF27
SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI000254139B	SEG:seg	:

Description

AT1G23900 (E=0.0) GAMMA-ADAPTIN 1, Gamma-ADR | GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1); binding / clathrin binding / protein binding / protein transporter

Coordinates

chrA07:-:8023340..8028843

Molecular Weight (calculated)

95882.5 Da

IEP (calculated)

5.887

GRAVY (calculated)

-0.058

Length

874 amino acids

Sequence
(BLAST)

001: MNPFSSSTRL RDMIRSIRAC KTAAEERGVV RKECADIRAS INENDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIVRK VPDLAENFIN AASSLLKEKH HGVLITGVQL
201: CYELCTINDE ALEFFRKKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLKLLRVL GHGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTSSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI AFDDQAVQRH RVTILECVKD PDASIRKRAL ELVSLLVNEN NVKQLTKELI DYLEISDEDF
401: KEDLSAKICS IVEKFSPEKI WYIDQMLKVL SEAGKFVKDD VWHALIVVIT NASELHGYTV RALYNAVLTY SEQETLVRVA IWCIGEYGDL LVNNVGMLGI
501: EDPITVTECD AVDVIVDAIT RHNSDMTTKA MALVALLKLS SRFPSISERI KDVILKQKGS LLLEMQQRAI EFNSIVERHK NIRSSLVERM PVLDEATFNV
601: RRAGSLPASV TTMAKPSVSI PNGVSAAPLV DLLDLGSDDI LAAPSSSSGA DFLQDLLGVD LGSSSAQSGA TPAPKAGTDL LLDILSIGTP SPAQNSTSAI
701: DLLSTADMNN NSSTALDTLS SSAPPHIATT ASAGGMFDLL DGLSTSPSKE ATNGPAYPPI VAYESSSLKI EFTFSKPSGN PQTTNVEATF INLSPNTFTD
801: FVFQAAVPKF LQLHLDPASS NTLPANGGKV TQNLRVTNSQ HGKKSLVMRM RIGYKVNGKD VLEEGQINNF PRGL

Best Arabidopsis Sequence Match ( AT1G23900.1 )
(BLAST)

001: MNPFSSGTRL RDMIRAIRAC KTAAEERAVV RKECADIRAL INEDDPHDRH RNLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHSNQY VVGLALCALG NICSAEMARD LAPEVERLIQ FRDPNIRKKA ALCSTRIIRK VPDLAENFVN AAASLLKEKH HGVLITGVQL
201: CYELCTINDE ALEYFRTKCT EGLIKTLRDI TNSAYQPEYD VAGITDPFLH IRLLRLLRVL GQGDADASDL MTDILAQVAT KTESNKNAGN AVLYECVETI
301: MAIEDTNSLR VLAINILGRF LSNRDNNIRY VALNMLMKAI TFDDQAVQRH RVTILECVKD PDASIRKRAL ELVTLLVNEN NVTQLTKELI DYLEISDEDF
401: KEDLSAKICF IVEKFSPEKL WYIDQMLKVL CEAGKFVKDD VWHALIVVIS NASELHGYTV RALYKSVLTY SEQETLVRVA VWCIGEYGDL LVNNVGMLGI
501: EDPITVTESD AVDVIEDAIT RHNSDSTTKA MALVALLKLS SRFPSISERI KDIIVKQKGS LLLEMQQRAI EYNSIVDRHK NIRSSLVDRM PVLDEATFNV
601: RRAGSFPASV STMAKPSVSL QNGVEKLPVA PLVDLLDLDS DDIMAAPSPS GTDFLQDLLG VDLGSSSAQY GATQAPKAGT DLLLDILSIG TPSPAQNSTS
701: SIGLLSIADV NNNPSIALDT LSSPAPPHVA TTSSTGMFDL LDGLSPSPSK EATNGPAYAP IVAYESSSLK IEFTFSKTPG NLQTTNVQAT FTNLSPNTFT
801: DFIFQAAVPK FLQLHLDPAS SNTLLASGSG AITQNLRVTN SQQGKKSLVM RMRIGYKLNG KDVLEEGQVS NFPRGL

Arabidopsis Description

GAMMA-ADRAP-1 complex subunit gamma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84K16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.