Factsheet for Os06t0167100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19397	Sorghum	cytosol, plastid	91.49	91.08
Zm00001d045195_P002	Maize	cytosol	89.54	89.85
TraesCS7B01G029800.2	Wheat	cytosol	89.2	89.2
HORVU7Hr1G027050.3	Barley	cytosol	88.97	89.07
TraesCS7D01G128900.2	Wheat	cytosol	88.74	88.74
TraesCS7A01G129800.3	Wheat	peroxisome	88.51	88.51
Zm00001d036305_P003	Maize	mitochondrion	90.92	87.31
Os02t0805000-01	Rice	cytosol, plasma membrane	48.51	86.3
GSMUA_Achr10P...	Banana	mitochondrion	32.07	82.79
CDX91727	Canola	mitochondrion	10.8	78.33
GSMUA_Achr9P18340_001	Banana	mitochondrion	75.63	76.25
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	75.4	76.01
VIT_01s0026g00310.t01	Wine grape	mitochondrion	72.41	71.75
KRH74623	Soybean	mitochondrion	70.34	70.26
KRH69527	Soybean	mitochondrion	70.34	70.1
CDY59088	Canola	mitochondrion	69.2	69.04
Bra024627.1-P	Field mustard	mitochondrion	69.08	68.92
CDY47649	Canola	mitochondrion	68.85	68.69
Solyc04g025870.2.1	Tomato	plastid	69.2	68.64
CDY25807	Canola	mitochondrion	68.97	68.57
CDY28466	Canola	mitochondrion	68.85	68.54
Bra012393.1-P	Field mustard	mitochondrion	68.62	68.31
AT1G23900.2	Thale cress	mitochondrion	68.51	68.04
PGSC0003DMT400010532	Potato	cytosol, mitochondrion	68.39	67.69
Solyc05g005780.2.1	Tomato	nucleus	68.28	67.58
KRH45711	Soybean	cytosol, mitochondrion	68.05	67.2
AT1G60070.2	Thale cress	cytosol, mitochondrion	68.85	66.7
CDY24514	Canola	cytosol	14.94	64.36
CDY33619	Canola	mitochondrion	32.07	61.32
GSMUA_Achr10P...	Banana	cytosol	24.71	58.58
Bra031528.1-P	Field mustard	mitochondrion	12.99	51.83
KRG99303	Soybean	nucleus	7.93	38.33
Os03t0112101-00	Rice	plasma membrane	14.02	31.28
Os01t0916200-02	Rice	plasma membrane	16.21	16.75
Os01t0512200-01	Rice	plasma membrane	15.17	13.97
Os03t0112400-01	Rice	cytosol	1.26	7.19

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.2.1	EntrezGene:4340249	EMBL:AK101686	InterPro:AP1_complex_gsu
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAD67607.1	ProteinID:BAF18832.1	ProteinID:BAS96343.1	InterPro:Clathrin/coatomer_adapt-like_N
InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	ProteinID:EEE65159.1	InterPro:GAE_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030121	GO:GO:0030131	GO:GO:0031410	InterPro:IPR008153	InterPro:IPR011989	EnsemblPlantsGene:Os06g0167100
EnsemblPlants:Os06t0167100-01	PFAM:PF01602	PFAM:PF02883	PIRSF:PIRSF037094	PFscan:PS50180	PANTHER:PTHR22780
PANTHER:PTHR22780:SF27	UniProt:Q5WAB3	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348	UniParc:UPI0000457920
RefSeq:XP_015643582.1	SEG:seg	:	:	:	:

Description

Armadillo-like helical domain containing protein. (Os06t0167100-01);Similar to AP-1 complex subunit gamma-1. (Os06t0167100-02)

Coordinates

chr6:+:3376576..3386400

Molecular Weight (calculated)

95116.6 Da

IEP (calculated)

6.010

GRAVY (calculated)

-0.055

Length

870 amino acids

Sequence
(BLAST)

001: MDLAINPFSS GTRLRDMIRA IRACKTAAEE RAVVRRECAA IRAAISEGDQ DYRHRNMAKL MFIHMLGYPT HFGQMECLKL IAAAGFPEKR IGYLGLMLLL
101: DERQEVLMLV TNSLKQDLNH SNQFIVGLAL CALGNICSAE MARDLSPEVE RLLQSREPNT KKKAALCSIR IVRKVPDLAE NFMGSAVSLL KEKHHGVLIS
201: AVQLCAELCK ASKEALEYLR KNCLDGLVRI LRDVSNSSYA PEYDIAGITD PFLHIRVLKL MRILGQGDAD CSEFVNDILA QVATKTESNK NAGNAILYEC
301: VETIMGIEAT SGLRVLAINI LGRFLSNRDN NIRYVALNML MKAMEVDTQA VQRHRATILE CVKDADVSIR KRALELVYLL VNDANAKSLT KELVDYLEVS
401: DQDFKDDLTA KICSIVEKFS QDKLWYLDQM FKVLSLAGNY VKDDVWHALI VLISNASELQ GYSVRSLYKA LLACGEQESL VRVAVWCIGE YGEMLVNNVG
501: MLDIEEPITV TESDAVDAVE VSLKRYSADV TTRAMCLVSL LKLSSRFPPT SERIKEIVAQ NKGNTVLELQ QRSIEFNSII QRHQSIKSSL LERMPVIDEA
601: SYLAKRAAST QATISSDKLA AAATPGSSLK LPNGVAKPPP APLADLLDLS SDDAPATTSA PTTAPNDFLQ DLLGIGLTDT STAGGAPSAS TDILMDLLSI
701: GSSPVQNGPP TVSNFSLPGQ AETKVAPVTP QVVDLLDGLS SSTSLSDENT AYPPITAFQS AALKITFNFK KQSGKPQETT IHASFTNLTS NTFTDFIFQA
801: AVPKFIQLRL DPASSNTLPA SGNDSVTQSL SVTNNQHGQK PLAMRIRITY KVNGEDRLEQ GQINNFPAGL

Best Arabidopsis Sequence Match ( AT1G60070.1 )
(BLAST)

001: MNPFSSGTRL SDMIRAIRAS KTAAEERAVV RKECAAIRAS INENDQDYRH RDLAKLMFIH MLGYPTHFGQ MECLKLIASP GFPEKRIGYL GLMLLLDERQ
101: EVLMLVTNSL KQDLNHTNQY IVGLALCALG NICSAEMARD LAPEVERLLQ FRDPNIRKKA ALCAIRIIRK VPDLSENFIN PGAALLKEKH HGVLITGVHL
201: CTEICKVSSE ALEYFRKKCT EGLVKTLRDI ANSPYSPEYD VAGITDPFLH IRLLKLLRVL GQGDADASDC MNDILAQVAS KTESNKNAGN AILYECVQTI
301: MSIEENGGLR VLAINILGKF LSNRDNNIRY VALNMLMRSL TVDSQAVQRH RATILECVKD SDASIQKRAL ELIYLLVNEN NVKPLAKELI EYLEVSEQDF
401: KGDLTAKICS IVEKFAPEKI WYIDQMLKVL SEAGTYVKED VWHALIVVIT NAPDLHGYTV RALYRALHTS FEQETLVRVA IWCIGEYADL LVNNAGMLDL
501: EDPITVTESD AVDVVENAIK HHLSDVTTKA MALIALLKIS SRFPSCSERV KSIIGQNKGS FVLELQQRSL EFSSVIQKHQ NIRSSLVERM PVLDEATFSG
601: RRAGSLPASV STSGKSPLGI PNGVAKAAAP LVDLLDLGSD DTPAPTSSSN NFLQDLLGVD LSQPSAQPGA MQPSQAGADI LMDLLSIGTP APVQNGSANG
701: DLLSIQDNNA PIAPSLTSPT APSSMMDLLD GFGPTPPKSE DKSAAYPSIV AFESSSLKIE FNFTKQSENP QTTDIVANFI NLTPNVYTEF LFQAAVPKFL
801: QLHLDPASSN SLPANGNIKQ TMRVTNSQKG KKPIVMRMRV GYKINGKDVL EEGQINNFPR GL

Arabidopsis Description

Adaptor protein complex AP-1, gamma subunit [Source:UniProtKB/TrEMBL;Acc:F4IEP9]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.