Factsheet for Os01t0916200-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
YLoc:	cytosol

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04102	Sorghum	cytosol	91.09	79.15
Bra024739.1-P	Field mustard	cytosol	24.58	78.71
TraesCS3D01G417200.1	Wheat	cytosol	87.65	77.44
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	87.41	77.23
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	87.41	76.43
Zm00001d012061_P005	Maize	cytosol	87.41	75.49
Zm00001d042370_P003	Maize	cytosol	85.99	74.56
TraesCS3A01G421500.1	Wheat	golgi	87.89	71.57
GSMUA_Achr8P08830_001	Banana	cytosol	65.56	66.99
CDY70074	Canola	cytosol	49.52	65.98
GSMUA_Achr11P...	Banana	cytosol	69.6	62.94
Bra023199.1-P	Field mustard	cytosol	67.22	60.34
AT1G31730.1	Thale cress	cytosol	66.98	60.13
VIT_02s0087g00690.t01	Wine grape	nucleus	68.53	59.98
CDY42099	Canola	cytosol	66.03	58.9
Solyc08g075310.2.1	Tomato	cytosol	66.27	57.64
KRH07246	Soybean	nucleus	67.1	57.59
KRH07767	Soybean	nucleus	66.86	57.39
KRH76456	Soybean	nucleus	65.68	57.25
CDX84997	Canola	cytosol	58.79	56.9
KRH39774	Soybean	nucleus	64.96	53.21
PGSC0003DMT400004931	Potato	nucleus	21.5	43.51
Zm00001d025314_P001	Maize	cytosol	5.7	29.81
Os03t0112101-00	Rice	plasma membrane	9.14	19.74
Os02t0805000-01	Rice	cytosol, plasma membrane	11.16	19.22
Os06t0167100-01	Rice	plasma membrane	16.75	16.21
Os01t0512200-01	Rice	plasma membrane	14.73	13.12
Os03t0112400-01	Rice	cytosol	0.95	5.23

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.5.2.2.1	UniProt:A0A0P0VC43	InterPro:AP4_complex_esu	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:BAS75882.1	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009506	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030124	InterPro:IPR011989	EnsemblPlantsGene:Os01g0916200	EnsemblPlants:Os01t0916200-02	PFAM:PF01602	PIRSF:PIRSF037097
PANTHER:PTHR22780	PANTHER:PTHR22780:SF13	SUPFAM:SSF48371	UniParc:UPI000393A7F6	SEG:seg	:

Description

Similar to predicted protein. (Os01t0916200-01);Clathrin/coatomer adaptor, adaptin-like, N-terminal domain containing protein. (Os01t0916200-02)

Coordinates

chr1:-:39931275..39937611

Molecular Weight (calculated)

91474.5 Da

IEP (calculated)

4.930

GRAVY (calculated)

-0.225

Length

842 amino acids

Sequence
(BLAST)

001: VSLFLDERHD LVILVVNTIQ KDLRSDNYLV VCAALTAACR LIGEEAIPAV LPQVVELLAH PKEAVRKKAV MALHRFYQRS PSSVSHLVSN FRKRLCDNDP
101: GVMGATLCPL YDLILEDPNS YKDLVVSFVN ILKQVAERRL PTSYDYHQMP APFIQIKLLK ILAVLGSGDK QASGNMYMVL GDIFRKGDTA SNIGNAILYE
201: CICCISSIFP NAKMLDAAAE TTSKFLKSDS HNLKYMGIDA LGRLIKINPD IAEEHQLAVI DCLEDPDDTL KRKTFELLYK MTKSTNVEVI VDRMIEYMIN
301: ITDHHYKTEI ASRCVELAEQ FAPSNQWFIQ TMNKVFEHAG DLVNIRVAHN LMRLIAEGFG EEDEGADSQL RSSAVDSYLR IVGEPKLPSS FLQIICWVLG
401: EYGTADGKYS ASYIIGKLYD VAEAHPTDDT VRAYAISAIL KIFAFEIALG RKIDMLPECQ SLIDELSASH STDLQQRAYE LQALLGLDKQ AVENVMPADA
501: SCEDIEIDRN LSFLNGYVQQ AIENGAAPYI PESERSGVVS VGNYKAQDQQ ETSAHALRFE AYELPPAASQ ASISPTTDLV PVPEPSYYKE DHQMSRSQPS
601: GDSLSGEFGL KLRLDGVQKK WGRPAYSSSS TPSSSTSSQQ ATNGGVSSEV GGSTSSQARE STYGSKRQQA TEVSAEKQRL AASLFGKADR KTQAGRKTAK
701: ESSSTEKVAT ANATPQPAKE QVIPSAPPPD LLDLGEPVSS SPPLADPFTQ LEGLLGPASA SPVVSETPAS STSKTPDLMS IFSDDVQTGV TSGSTEPSLG
801: VNVVAAKKGP SLQDALQKDA AARQVGVTPT GNNPILFKDL LG

Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG

Arabidopsis Description

AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.