CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76456	Soybean	nucleus	88.42	94.1
Bra024739.1-P	Field mustard	cytosol	20.62	80.61
KRH07246	Soybean	nucleus	76.07	79.71
KRH07767	Soybean	nucleus	75.78	79.41
CDY70074	Canola	cytosol	48.64	79.11
VIT_02s0087g00690.t01	Wine grape	nucleus	68.68	73.39
AT1G31730.1	Thale cress	cytosol	64.11	70.26
GSMUA_Achr8P08830_001	Banana	cytosol	56.13	70.02
Solyc08g075310.2.1	Tomato	cytosol	65.37	69.42
Bra023199.1-P	Field mustard	cytosol	63.13	69.19
CDY42099	Canola	cytosol	63.03	68.64
Zm00001d025314_P001	Maize	cytosol	10.51	67.08
CDX84997	Canola	cytosol	56.23	66.44
GSMUA_Achr11P...	Banana	cytosol	60.12	66.38
EES04102	Sorghum	cytosol	61.28	65.02
Os01t0916200-02	Rice	plasma membrane	53.21	64.96
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	59.82	64.53
TraesCS3D01G417200.1	Wheat	cytosol	59.63	64.32
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	59.44	63.45
Zm00001d012061_P005	Maize	cytosol	59.63	62.87
Zm00001d042370_P003	Maize	cytosol	58.07	61.48
TraesCS3A01G421500.1	Wheat	golgi	59.73	59.38
PGSC0003DMT400004931	Potato	nucleus	21.01	51.92
KRH69527	Soybean	mitochondrion	18.48	21.76
KRH74623	Soybean	mitochondrion	18.29	21.58
KRH45711	Soybean	cytosol, mitochondrion	17.32	20.2
KRH26563	Soybean	endoplasmic reticulum	16.93	17.06
KRH22743	Soybean	cytosol, endoplasmic reticulum	16.73	16.86
KRH41691	Soybean	cytosol	14.11	15.83
KRH60392	Soybean	cytosol	14.59	15.35
KRG99303	Soybean	nucleus	2.04	11.67
KRH25154	Soybean	cytosol	3.4	8.6

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100780202	MapMan:22.5.2.2.1	EMBL:ACUP02005959	InterPro:AP4_complex_esu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	EnsemblPlantsGene:GLYMA_09G218500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030124
UniProt:I1L5C0	InterPro:IPR011989	EnsemblPlants:KRH39774	ProteinID:KRH39774	ProteinID:KRH39774.1	PFAM:PF01602
PIRSF:PIRSF037097	PANTHER:PTHR22780	PANTHER:PTHR22780:SF13	SUPFAM:SSF48371	UniParc:UPI00029660D5	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:44148810..44157517

Molecular Weight (calculated)

112256.0 Da

IEP (calculated)

5.974

GRAVY (calculated)

-0.199

Length

1028 amino acids

Sequence
(BLAST)

0001: MSSKVVFTVG DPASDHSLIL RHPEAPNDAV CCCCSILSVS SSSSSHTFKG GAVEEAGGEG AMGSNNHGNS KEFLELIKSI GESRSKAEED CIVLREIETL
0101: KRRINDADTP KRKIKEYIIR LLYVEMLGHD ASFGYIHAVK MTHHDSLLLK RTGYLALTLF LSDDHDLIIL IVNTIQKDLA SDNYLVVCAA LNAVCRLINE
0201: ETIPAVLPRV VELLHHSKDA VRKKAVMALH RFYLKSPSSV SHLLSNFRKR LFDNDPGVMG ASLCPLSNIV SDDVNSFKDL VVSFVNILKQ VAEHRLPKTY
0301: DYHQMPAPFI QIKLLKILAL LGSGDKQASG HMYTVLGDII RRSDSMTNIG NAVLYQCICC VASIYPNPKL LEAAADVIAK FLKSDSHNLK YMGIDALGRL
0401: IKLSPHIAEQ HQLAVIDCLE DPDDSLKRKT FELLYKMTKS SNVEVIVDRM IDYMISMSDD HYKTYIASRC VELAEQFAPS NYWFIQTMNK VFEHAGDLVN
0501: IKVAHNLMRL IAEGFGEDDD AADSQLRSSA VESYLRIIGE PKLPSVFLQV ICWVLGEYGT VDGKYSASYI SGKLCDIAEA YSNDENVKAN AISALMKIYA
0601: FEVAAGRKVD ILSECQSLIE ELLASHSSDL QQRAYELQAF IGLDVQAVET IMPRDASCED IEVDKNLSFL NGYVQQSLER GAESYIPEDV RAGMGNMKNF
0701: RSQDHHETLQ HGLRFEAYEV PKPPMQPKVT PVSFASSADI VPVPDVLSSR ETHHISSVGS TSEVGSSELK LRLDGVQKKW GKPTYSSSTS SASASYSTSQ
0801: KPTSGATLVD GATTVNSKVH DTYDSRKTQV EITPEKQKLA ASLFGGSTKP EKRSSTSHKV SKSSASAADG SRGSKAAVVP NEVAVEKAIH QPPPADLLDL
0901: DEPTVTTAPP SVDPFKELEG LLDPSTNSAT NHNVAAATNA PDIMSLYAET TVSGGDSIPV SGGYDVNLLS ELSNAATKAT REETIVKPLP QSIKGPDAKD
1001: SLEKDALVRQ MGVKPSSQNP NLFSDLLG

Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG

Arabidopsis Description

AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.