Factsheet for Zm00001d025314_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70074	Canola	cytosol	77.64	19.78
EES04102	Sorghum	cytosol	95.03	15.79
Zm00001d042370_P003	Maize	cytosol	95.03	15.76
TraesCS3D01G417200.1	Wheat	cytosol	93.17	15.74
TraesCS3B01G457300.1	Wheat	cytosol, nucleus, plastid	93.17	15.74
HORVU3Hr1G093320.4	Barley	cytosol, mitochondrion, nucleus	93.17	15.58
GSMUA_Achr8P08830_001	Banana	cytosol	79.5	15.53
Zm00001d012061_P005	Maize	cytosol	93.79	15.49
TraesCS3A01G421500.1	Wheat	golgi	92.55	14.41
CDX84997	Canola	cytosol	77.64	14.37
GSMUA_Achr11P...	Banana	cytosol	80.12	13.86
Bra023199.1-P	Field mustard	cytosol	77.64	13.33
AT1G31730.1	Thale cress	cytosol	77.64	13.33
CDY42099	Canola	cytosol	77.64	13.24
KRH07767	Soybean	nucleus	76.4	12.54
KRH07246	Soybean	nucleus	76.4	12.54
VIT_02s0087g00690.t01	Wine grape	nucleus	70.19	11.75
Solyc08g075310.2.1	Tomato	cytosol	68.94	11.47
KRH76456	Soybean	nucleus	66.46	11.08
KRH39774	Soybean	nucleus	67.08	10.51
Os01t0916200-02	Rice	plasma membrane	29.81	5.7
Zm00001d045195_P002	Maize	cytosol	22.98	4.27
Zm00001d036305_P003	Maize	mitochondrion	22.98	4.08
Zm00001d051998_P003	Maize	cytosol	21.74	3.88
Zm00001d023820_P001	Maize	mitochondrion	21.74	3.78
Zm00001d041626_P001	Maize	plastid	21.12	3.61
Zm00001d027333_P018	Maize	cytosol	22.36	3.37
Zm00001d048511_P008	Maize	cytosol	21.74	3.29
PGSC0003DMT400004931	Potato	nucleus	0.0	0.0
Bra024739.1-P	Field mustard	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	UniProt:A0A1D6J6G0	ProteinID:AQK43508.1	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	InterPro:IPR011989	PFAM:PF01602	PANTHER:PTHR22780	PANTHER:PTHR22780:SF13
SUPFAM:SSF48371	UniParc:UPI0008444D0B	EnsemblPlantsGene:Zm00001d025314	EnsemblPlants:Zm00001d025314_P001	EnsemblPlants:Zm00001d025314_T001	:

Description

AP-4 complex subunit epsilon

Coordinates

chr10:-:114014799..114015284

Molecular Weight (calculated)

18446.6 Da

IEP (calculated)

8.098

GRAVY (calculated)

-0.217

Length

161 amino acids

Sequence
(BLAST)

001: MEQLWTIGRE LAMGSQGGWG QSKEFLDLVK SIGEARSKAE EDRIIARELE HLKRRLADPD VPRRKMKELL LRLVYVEMLG HDASFCHIHA VKMTHDESLP
101: LKRTGYRAVA LFLDERHDLV ILVVNTIQKD LRSDNYLVVY AALTAACRLI GEEALPCRPR L

Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)

001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG

Arabidopsis Description

AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.