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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH07246 Soybean nucleus 96.13 96.13
CDY70074 Canola cytosol 54.54 84.65
Bra024739.1-P Field mustard cytosol 21.81 81.37
KRH76456 Soybean nucleus 80.02 81.26
Zm00001d025314_P001 Maize cytosol 12.54 76.4
VIT_02s0087g00690.t01 Wine grape nucleus 74.62 76.09
KRH39774 Soybean nucleus 79.41 75.78
GSMUA_Achr8P08830_001 Banana cytosol 62.59 74.51
AT1G31730.1 Thale cress cytosol 69.32 72.49
Bra023199.1-P Field mustard cytosol 68.91 72.07
Solyc08g075310.2.1 Tomato cytosol 70.54 71.49
CDY42099 Canola cytosol 67.99 70.66
GSMUA_Achr11P... Banana cytosol 66.26 69.82
CDX84997 Canola cytosol 61.47 69.31
TraesCS3B01G457300.1 Wheat cytosol, nucleus, plastid 66.46 68.42
TraesCS3D01G417200.1 Wheat cytosol 66.26 68.21
EES04102 Sorghum cytosol 66.97 67.8
HORVU3Hr1G093320.4 Barley cytosol, mitochondrion, nucleus 66.06 67.29
Os01t0916200-02 Rice plasma membrane 57.39 66.86
Zm00001d012061_P005 Maize cytosol 65.34 65.74
Zm00001d042370_P003 Maize cytosol 63.61 64.26
TraesCS3A01G421500.1 Wheat golgi 66.36 62.96
PGSC0003DMT400004931 Potato nucleus 22.12 52.16
KRH69527 Soybean mitochondrion 19.06 21.42
KRH74623 Soybean mitochondrion 18.86 21.24
KRH45711 Soybean cytosol, mitochondrion 18.45 20.54
KRH26563 Soybean endoplasmic reticulum 16.92 16.27
KRH22743 Soybean cytosol, endoplasmic reticulum 16.82 16.18
KRH41691 Soybean cytosol 14.98 16.05
KRH60392 Soybean cytosol 15.09 15.15
KRG99303 Soybean nucleus 2.14 11.67
KRH25154 Soybean cytosol 3.77 9.09
Protein Annotations
Gene3D:1.25.10.10EntrezGene:100806914MapMan:22.5.2.2.1EMBL:ACUP02010098InterPro:AP4_complex_esuInterPro:ARM-like
InterPro:ARM-type_foldInterPro:Clathrin/coatomer_adapt-like_NEnsemblPlantsGene:GLYMA_16G109200GO:GO:0003674GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005794GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0015031GO:GO:0016020GO:GO:0016192GO:GO:0030117GO:GO:0030124
InterPro:IPR011989UniProt:K7MGK0EnsemblPlants:KRH07767ProteinID:KRH07767ProteinID:KRH07767.1PFAM:PF01602
PIRSF:PIRSF037097PANTHER:PTHR22780PANTHER:PTHR22780:SF13SUPFAM:SSF48371UniParc:UPI000233B4B4SEG:seg
Description
hypothetical protein
Coordinates
chr16:+:23111690..23133677
Molecular Weight (calculated)
107765.0 Da
IEP (calculated)
5.997
GRAVY (calculated)
-0.274
Length
981 amino acids
Sequence
(BLAST)
001: MEQLKTIGRE LAMGSQGGFG QSKEFLELVK SIGESRSKAE EDRIVLREIE TLKRRIAEPD IPKRKMKEYI IRLLYVEMLG HDASFGHIHA VKMTHDDSLL
101: LKRTGYLAVT LLLNDDDDLI ILIVNTIQKD LKSDNYLVVC AALSAVCRLI NEETIPAVLP SVVDLLAHPK DAVRKKAVMA LHRFHHKSPS SVSHLISNFR
201: KKLCDNDPGV MGATLCPLFD LIAVDPSPYK DLVVSFVSIL KQVAEHRLPK SYDYHQMPAP FIQIKLLKIL ALLGSGDKQA SEQMYTVIGE IIRKGDSSSN
301: IGNAILYGCI CCVSSIYPNA KLLEAAADVN AKFLKSDSHN LKYMGIDALG RLIKISPHVA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIS DDHYKTYIAS RCVELAEQFA PSNHWFIQTM NKVFEHAGDL VNIKVAHNLM RLIGEGFGED DDAAYSQLRS SAVESYLQII GEPKLPSAFL
501: QVICWVLGEY GTADGKYSAS YITGKLCDVA EAYSNDETVK AYAVSALTKI YAFEIAAGRK VDMLPECLSF IEELLASHST DLQQRAYELQ ALIGLDARAV
601: ETIMPQDASC EDIEVDKNLS FLYEYVQQSL ERGALPYIPE DERNGMVNVS NFRSQDQHES AQHGLRFEAY EVPKPPMPSK LAPVSLSSST DLVPVPEPLY
701: SRETHPISSM GASETGSSGL KLKLDGVQKK WGRPIYSSPA SSSSTSTSQN SVNGVTQMDV ATAVNSKGRD NYDRRKQRIE ISPEKQKLAD KLFGGSTKTE
801: KRSSTSNKVP KASTSAADRT QESKAAAVPS EVAREKTNQQ SPPPDLLDLG EPTVTVAPPS VDPFKQLEGL LDPNLSSTAN RSGAAVTNAP DIMALYAETP
901: ESRESGSGDY SIPVRGDNVN LLSEFSNAAA RGTTVETTVT PLSQSVKGPN VKDSLQKDAK VRKMGVTPSG QNPNLFSDLL G
Best Arabidopsis Sequence Match ( AT1G31730.1 )
(BLAST)
001: MEQLKTIGRE LAMGSQGGFG QSKEFLDLVK SIGEARSKAE EDRIVLSEVD ILKRRLLEPD IPKRKMKEYI IRLVYIEMLG HDASFGYIYA VKMTHDDNLL
101: LKRTGYLAVT LFLNEDHDLI ILIVNTIQKD LRSDNYLVVC AALNAICRLI NEETIPAVLP QVVELLNHQK EAVRKKAIMA LHRFHRKSPS SVSHLVSNFR
201: KRLCDNDPGV MGATLCPLFD LISEDVNSYK DLVSSFVSIL KQVTERRLPK SYDYHQMPAP FIQIKLLKIM ALLGSGDKNA SDIMSMVLGD LFRKCDSSTN
301: IGNAILYECI RCISCILPNP KLLEAAADAI SKFLKSDSHN LKYMGIDGLG RLIKISPDIA EQHQLAVIDC LEDPDDTLKR KTFELLYKMT KSSNVEVIVD
401: RMIDYMISIN DNHYKTEIAS RCVELAEQFA PSNQWFIQIM NKVFEHAGDL VNIKVAHNLM RLIAEGFGED DDDADSKLRL SAVESYLQLI SEPKLPSLFL
501: QVISWVLGEY GTADGKYSAS YISGKLCDVA DAYSSDETVK GYAVSALMKI YAFEIASGRK VDVLPECQSL IEELLASHST DLQQRAYELQ ALLALDARAV
601: ETILPLDASC EDIEVDKDLS FLNGYIQQAI ESGAQPYISE RERSGMFETT DYHPQDHHEV PTHALRFEAY ELPKPSVPPQ ASNELVPVPE PSYYSESHQP
701: ISTSLVSERE SSEIKLRLDG VKQKWGRPSY QSTTAASSTT PQAANGISTH SDAGVGSSSS KPRSSYEPKK PEIDPEKQRL AASLFGGSSS RTDKRSSSGG
801: HKPAKGTANK TATVPKENQT PVQPPPDLLD FGEPTATTAT AMDPFKELEG LMDSSSQDGG SSDVMGLYSD AAPVTTTTSV DSLLSELSDS SKGNSRTYQP
901: QTSKGPNTKE ALEKDALVRQ MGVNPTSQNP TLFKDLLG
Arabidopsis Description
AP-4 complex subunit epsilon [Source:UniProtKB/Swiss-Prot;Acc:Q8L7A9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.