CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0112400-01	Rice	cytosol	11.79	31.37
KRH22743	Soybean	cytosol, endoplasmic reticulum	71.01	28.33
KRH26563	Soybean	endoplasmic reticulum	71.01	28.33
GSMUA_Achr5P15260_001	Banana	cytosol	8.35	25.95
GSMUA_Achr1P01770_001	Banana	cytosol	61.67	24.49
KXG40365	Sorghum	cytosol	60.44	23.56
Zm00001d027333_P018	Maize	cytosol	61.18	23.31
TraesCS4B01G395700.3	Wheat	cytosol, unclear	59.46	23.25
Zm00001d048511_P008	Maize	cytosol	60.44	23.1
TraesCS5A01G557300.1	Wheat	cytosol	58.97	23.03
HORVU4Hr1G089310.1	Barley	cytosol	59.71	22.88
GSMUA_Achr5P15250_001	Banana	cytosol	51.6	21.15
Os03t0112101-00	Rice	plasma membrane	8.35	8.72
KRG99303	Soybean	nucleus	2.95	6.67
KRH74623	Soybean	mitochondrion	13.51	6.31
KRH69527	Soybean	mitochondrion	13.02	6.07
KRH45711	Soybean	cytosol, mitochondrion	12.29	5.68
KRH76456	Soybean	nucleus	9.83	4.14
KRH07246	Soybean	nucleus	9.34	3.87
KRH07767	Soybean	nucleus	9.09	3.77
KRH60392	Soybean	cytosol	8.6	3.58
KRH39774	Soybean	nucleus	8.6	3.4
KRH41691	Soybean	cytosol	6.88	3.06

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:35.1	EMBL:ACUP02007211	InterPro:ARM-like	InterPro:Clathrin_a/b/g-adaptin_app_Ig
InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C	EnsemblPlantsGene:GLYMA_12G084200	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	GO:GO:0030131	InterPro:IPR011989	UniProt:K7LTR0	EnsemblPlants:KRH25154	ProteinID:KRH25154
ProteinID:KRH25154.1	PFAM:PF02883	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF49348
SUPFAM:SSF55711	UniParc:UPI000294A394	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:6728859..6735461

Molecular Weight (calculated)

45869.5 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.148

Length

407 amino acids

Sequence
(BLAST)

001: MRGLPVFISD IRNCQNKEHE RLRVDKEHGN IRTRFKTEKP YAAAKARVYL DKPAIHETMV KVSAYILGEF GHLHTLLPFL FFSQHMLKFL CTLNQQTLSY
101: RIRYGAIFKK YDAVEYFALS RKGAALMDIL AEMPKFPERQ SALIKKKAED TEVDTTEQIQ AVMCVKSLSA IVPAGEQADS MQPIGNTGER FCSLCLKDSG
201: VLYEDPYIQI GVEAEWRAHH GHLVLFLGNK NTSPLISVQS LVLPPAHLKM ELSLVPETIP PRSQVQCPLK IINLHPSRDV AVLDFSYKFD NNMLMSRTRL
301: FLQTGQRQTS PSSFCVFTNS VLSELIQFVR GVRPLPLLEL ANLFNSYHLT SCPGLDPNPN NLVASITFHS ESTSAMLCLT TELRMTVASG YAYTYARTSN
401: DSTSQHS

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.