Factsheet for GSMUA_Achr5P15250_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P24200_001
GSMUA_Achr2P11020_001
GSMUA_Achr2P18700_001
GSMUA_Achr3P27960_001
GSMUA_Achr4P29710_001
GSMUA_Achr6P17830_001
GSMUA_Achr7P02300_001
GSMUA_Achr8P19280_001	golgi
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr8P19280_001	AT1G47830.1	23975899
AT5G22770.1	GSMUA_Achr10P...	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr6P17830_001	AT3G01780.1	24529374
AT5G22770.1	GSMUA_Achr1P24200_001	AT4G23460.1	23975899
AT5G22770.1	GSMUA_AchrUn_...	AT4G23460.1	23975899
AT5G22770.1	GSMUA_Achr3P27960_001	AT5G57460.1	24529374
AT5G22770.1	GSMUA_Achr2P11020_001	AT5G65960.1	23975899
AT5G22770.1	GSMUA_Achr4P29710_001	AT5G65960.1	23975899
AT5G22780.1	GSMUA_Achr2P18700_001	AT1G05020.1	15054111
AT5G22780.1	GSMUA_Achr7P02300_001	AT1G05020.1	15054111

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P01770_001	Banana	cytosol	79.66	77.17
Solyc11g066760.1.1	Tomato	cytosol	33.43	71.09
VIT_06s0061g01170.t01	Wine grape	cytosol	72.21	70.64
Solyc06g074650.2.1	Tomato	plastid	68.68	67.06
KXG40365	Sorghum	cytosol	70.09	66.67
CDY20344	Canola	cytosol	43.2	66.51
Solyc11g066770.1.1	Tomato	cytosol	28.6	65.44
TraesCS4B01G395700.3	Wheat	cytosol, unclear	68.18	65.03
TraesCS5A01G557300.1	Wheat	cytosol	67.98	64.78
Os03t0112400-01	Rice	cytosol	9.97	64.71
Zm00001d027333_P018	Maize	cytosol	69.39	64.51
Zm00001d048511_P008	Maize	cytosol	68.78	64.13
CDY26951	Canola	cytosol	64.85	63.89
Bra002427.1-P	Field mustard	cytosol	64.75	63.85
CDX92339	Canola	cytosol	64.75	63.85
AT5G22780.1	Thale cress	cytosol	64.95	63.67
AT5G22770.1	Thale cress	cytosol	64.85	63.64
Bra037603.1-P	Field mustard	cytosol	64.95	63.61
HORVU4Hr1G089310.1	Barley	cytosol	66.26	61.96
Os03t0112101-00	Rice	plasma membrane	24.27	61.79
CDY29719	Canola	cytosol	58.61	59.33
KRH25154	Soybean	cytosol	21.15	51.6
CDY20343	Canola	cytosol	16.01	50.96
GSMUA_Achr9P18340_001	Banana	mitochondrion	17.22	19.81
GSMUA_Achr3P10470_001	Banana	cytosol, mitochondrion	16.82	19.35
GSMUA_Achr10P...	Banana	cytosol	6.24	16.89
GSMUA_Achr10P...	Banana	mitochondrion	5.54	16.32
GSMUA_Achr8P08830_001	Banana	cytosol	12.59	15.17
GSMUA_Achr11P...	Banana	cytosol	13.49	14.39
GSMUA_Achr4P06740_001	Banana	cytosol, plastid	8.86	12.32
GSMUA_Achr4P13750_001	Banana	nucleus, plastid	9.37	11.67
GSMUA_Achr5P15260_001	Banana	cytosol	0.5	3.82

Protein Annotations

Gene3D:1.25.10.10	Gene3D:2.60.40.1230	MapMan:22.1.3.1	Gene3D:3.30.310.10	InterPro:AP2_complex_asu	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	InterPro:Clathrin_a-adaptin_app_sub_C	InterPro:Clathrin_a/b/g-adaptin_app_Ig	InterPro:Clathrin_app_Ig-like_sf	InterPro:Coatomer/calthrin_app_sub_C
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030131	GO:GO:0035615	GO:GO:0072583	EnsemblPlantsGene:GSMUA_Achr5G15250_001	EnsemblPlants:GSMUA_Achr5P15250_001	EnsemblPlants:GSMUA_Achr5T15250_001
InterPro:IPR011989	InterPro:IPR012295	UniProt:M0SYQ4	PFAM:PF01602	PFAM:PF02296	PFAM:PF02883
PIRSF:PIRSF037091	PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SMART:SM00809	SUPFAM:SSF48371	SUPFAM:SSF49348
SUPFAM:SSF55711	InterPro:TBP_dom_sf	UniParc:UPI00029604F0	SEG:seg	:	:

Description

AP-2 complex subunit alpha-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G15250_001]

Coordinates

chr5:-:11192313..11216456

Molecular Weight (calculated)

110269.0 Da

IEP (calculated)

5.874

GRAVY (calculated)

0.033

Length

993 amino acids

Sequence
(BLAST)

001: MLVKAPTSIH PVGNIGGKEF SESLATDVQK LLVSSSCRPL VRKKAALCLL RLYRKNPDVV NIDGWSDRMS QLLDERDLGV LTSVMSLFVA LVSNNVEAYW
101: NCLPKCVKIL ERLGRNQDVP QEYTYHGIPS PWIQVKTMRA LQYFPTIEDP NTKRALFEVL QRILMGTDVV KNVNKNNAAH AILFEALALV VHLDAEKEMM
201: SQCVALLGKF VAVREPNIRY LGLENMTRML LVSDVQDIIK SHQAQIIISL KDPDISHTRT ICVGSGTGSD LTASLNVIRR RALDLLYGMC DVTNAKDIVE
301: ELLQYLNTAD FAMREELALK AAILAEKFAP DLSWYVDVIL QLIDKAGDFV SDDIWYRVVQ FVTNNEDLQP YAATKAREYL EKPVLHETMV KVSAYLLGEY
401: NHLLARRTGC TPKEIFIIIN EKLPTVTTST VAIVLSTYAK ILMHNHPPDP ELQEQIWSIF RKYESYIDVE IQQRAVEYIA LCNKGAALVD VLAEMPKFPE
501: RQSALLKKAE VAEVDTAEQS AIRIRSQQQT SNALVVTDQR PTEGSLPVSQ LGVVRMPSGK MEASTQDQTS FQDQGMTKEN GVITEVVPQD VPPADLLGDL
601: LGPLAINGSP ATAVPVEQRN QNLLSVVEAT PEAAGSLALT TVDNQPNSIQ CTIQCSDIVS LVWMLKPVSV WDLKFLLHTT ASTEFNYMNS KFITRSKQAF
701: SLFSCAHLVT VIVFLQPIVN IAERFNELCL KDSGVLYEDL HIQIGIKAEW QAHHGHIVLF LGNKNTSPLV SVQALILPPT HLKMELSLVP ETVPPRAQVQ
801: CPLEFVNLRA SRDVAVLDFS YKFGTAMVYV KLRLPAVINK FLQPISVTAE EFFAQWKSLS GPPLKLQEVL RGVKPLSLPE MANLFTSLHL AVNPGIDTNP
901: NNLIACTTFY SESTRATLCL IRVETDPSDR TQLRITIASG DPTLTFELKE SIKEYLVNIP TQTSSAVVAP SQPQSPVTPV AYNDPGAMLA GLL

Best Arabidopsis Sequence Match ( AT5G22770.3 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYLDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TISTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAMV LADQQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSN
0701: EQHGPVGAEG VPDEVDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGA NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSESTG AILCLARIET DPADRTQLRM TVGTGDPTLT FELKEFIKEQ LITVPMGSRA LVPAAGPAPP VAQPPSPAAL
1001: ADDPGAMLAG LL

Arabidopsis Description

ALPHA-ADRAP-2 complex subunit alpha-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.