Factsheet for Os03t0112101-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0793100-01
Os03t0355600-01
Os04t0584800-01
Os08t0243900-01
Os11t0104866-00	plasma membrane
Os11t0104900-00	plasma membrane
Os11t0175900-01
Os12t0104766-00	plasma membrane
Os12t0104800-01	plasma membrane
Os12t0207300-01	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22770.1	Os12t0207300-01	AT1G47830.1	23975899
AT5G22770.1	Os12t0207300-01	AT1G47830.1	23975899
AT5G22770.1	Os02t0793100-01	AT3G01780.1	24529374
AT5G22770.1	Os11t0175900-01	AT3G01780.1	24529374
AT5G22770.1	Os11t0104866-00	AT3G11130.1	23975898
AT5G22770.1	Os11t0104900-00	AT3G11130.1	23975898
AT5G22770.1	Os12t0104766-00	AT3G11130.1	23975898
AT5G22770.1	Os12t0104800-01	AT3G11130.1	23975898
AT5G22770.1	Os03t0355600-01	AT4G23460.1	23975899
AT5G22770.1	Os08t0243900-01	AT5G57460.1	24529374
AT5G22770.1	Os04t0584800-01	AT5G65960.1	23975899

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P15260_001	Banana	cytosol	30.51	90.84
CDY20343	Canola	cytosol	69.49	86.86
Solyc11g066760.1.1	Tomato	cytosol	80.0	66.81
TraesCS4B01G395700.3	Wheat	cytosol, unclear	98.97	37.08
TraesCS5A01G557300.1	Wheat	cytosol	98.97	37.04
KXG40365	Sorghum	cytosol	98.72	36.88
HORVU4Hr1G089310.1	Barley	cytosol	98.97	36.35
GSMUA_Achr1P01770_001	Banana	cytosol	94.62	36.0
Zm00001d048511_P008	Maize	cytosol	97.95	35.87
Zm00001d027333_P018	Maize	cytosol	98.21	35.86
VIT_06s0061g01170.t01	Wine grape	cytosol	92.56	35.57
Solyc06g074650.2.1	Tomato	plastid	92.05	35.3
Bra037603.1-P	Field mustard	cytosol	88.72	34.12
AT5G22770.1	Thale cress	cytosol	87.95	33.89
AT5G22780.1	Thale cress	cytosol	87.95	33.86
CDX92339	Canola	cytosol	86.92	33.66
Bra002427.1-P	Field mustard	cytosol	86.92	33.66
CDY26951	Canola	cytosol	86.92	33.63
CDY29719	Canola	cytosol	71.54	28.44
GSMUA_Achr5P15250_001	Banana	cytosol	61.79	24.27
Os02t0805000-01	Rice	cytosol, plasma membrane	30.26	24.13
Os06t0167100-01	Rice	plasma membrane	31.28	14.02
Os01t0916200-02	Rice	plasma membrane	19.74	9.14
KRH25154	Soybean	cytosol	8.72	8.35
Os01t0512200-01	Rice	plasma membrane	18.21	7.51
CDY20344	Canola	cytosol	3.85	2.33
Os03t0112400-01	Rice	cytosol	0.0	0.0
Solyc11g066770.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.10.10	MapMan:22.1.3.1	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Clathrin/coatomer_adapt-like_N	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005905	GO:GO:0006810	GO:GO:0006886	GO:GO:0006897	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030131
GO:GO:0035615	GO:GO:0072583	InterPro:IPR011989	EnsemblPlantsGene:Os03g0112101	EnsemblPlants:Os03t0112101-00	PFAM:PF01602
PANTHER:PTHR22780	PANTHER:PTHR22780:SF4	SUPFAM:SSF48371	UniParc:UPI0003938BBB	:	:

Description

Similar to Adaptin N terminal region family protein, expressed. (Os03t0112101-00)

Coordinates

chr3:+:697964..702761

Molecular Weight (calculated)

44735.9 Da

IEP (calculated)

8.856

GRAVY (calculated)

-0.133

Length

390 amino acids

Sequence
(BLAST)

001: MALSGMRGLS VFISDIRNCH NKEQERLRVD KELGNIRTRF KNEKGLSPYE KKKYVWKMLY IYMLGYDVDF GHMETVSLIS APKYPEKQVG YIVTSCLLNE
101: NNDFLRMVIN TVRNDIIGRN ETYQCLALTM VGNIGGKEFS ESLAPDVQKL LISSSCRPVV RKKAALCLLR LYRKNPDVVN IDGWSDRMAQ LLDERDLGVL
201: TSVMSLFVSL VSNNAEAYWN CLPKCVRILE RMARNQDIPQ EYTYYGIPSP WLQVKTMRAL QYFPTIEDPG ARRALFEVLQ RILMGTDVVK NVNKNNASHA
301: VLFEALALVM HLDAEKEMMS QCVALLGKFI AVREPNIRYL GLENMSRMLL VTDVQDIIKR HQAQIITSLK DPDISIRRRA LDLLYGMCDV

Best Arabidopsis Sequence Match ( AT5G22780.1 )
(BLAST)

0001: MTGMRGLSVF ISDVRNCQNK EAERLRVDKE LGNIRTCFKN EKVLTPYKKK KYVWKMLYIH MLGYDVDFGH MEAVSLISAP KYPEKQVGYI VTSCLLNENH
0101: DFLKLAINTV RNDIIGRNET FQCLALTLVG NIGGRDFAES LAPDVQKLLI SSSCRPLVRK KAALCLLRLF RKNPDAVNVD GWADRMAQLL DERDLGVLTS
0201: STSLLVALVS NNHEAYSSCL PKCVKILERL ARNQDVPQEY TYYGIPSPWL QVKAMRALQY FPTIEDPSTR KALFEVLQRI LMGTDVVKNV NKNNASHAVL
0301: FEALSLVMHL DAEKEMMSQC VALLGKFISV REPNIRYLGL ENMTRMLMVT DVQDIIKKHQ SQIITSLKDP DISIRRRALD LLYGMCDVSN AKDIVEELLQ
0401: YLSTAEFSMR EELSLKAAIL AEKFAPDLSW YVDVILQLID KAGDFVSDDI WFRVVQFVTN NEDLQPYAAS KAREYMDKIA IHETMVKVSA YILGEYGHLL
0501: ARQPGCSASE LFSILHEKLP TVSTPTIPIL LSTYAKLLMH AQPPDPELQK KVWAVFKKYE SCIDVEIQQR AVEYFELSKK GPAFMDVLAE MPKFPERQSS
0601: LIKKAENVED TADQSAIKLR AQQQPSNAIV LADPQPVNGA PPPLKVPILS GSTDPESVAR SLSHPNGTLS NIDPQTPSPD LLSDLLGPLA IEAPPGAVSY
0701: EQHGPVGAEG VPDEIDGSAI VPVEEQTNTV ELIGNIAERF HALCLKDSGV LYEDPHIQIG IKAEWRGHHG RLVLFMGNKN TSPLTSVQAL ILPPAHLRLD
0801: LSPVPDTIPP RAQVQSPLEV MNIRPSRDVA VLDFSYKFGT NVVSAKLRIP ATLNKFLQPL QLTSEEFFPQ WRAISGPPLK LQEVVRGVRP LALPEMANLF
0901: NSFHVTICPG LDPNPNNLVA STTFYSETTG AMLCLARIET DPADRTQLRL TVGSGDPTLT FELKEFIKEQ LITIPMGSRA LVPAAGPAPS PAVQPPSPAA
1001: LADDPGAMLA GLL

Arabidopsis Description

ALPHAC-ADAP-2 complex subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPK4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.