Factsheet for Os12t0207300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 4
plasma membrane 2
golgi 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16862	Sorghum	cytosol	100.0	100.0
KRH17427	Soybean	mitochondrion	97.18	97.18
KRH05944	Soybean	mitochondrion	97.18	97.18
HORVU5Hr1G033310.1	Barley	mitochondrion	97.18	97.18
TraesCS5D01G119700.1	Wheat	mitochondrion	97.18	97.18
PGSC0003DMT400025529	Potato	mitochondrion	96.48	96.48
Solyc04g081410.2.1	Tomato	plastid	96.48	96.48
TraesCS5B01G113000.1	Wheat	cytosol	96.48	96.48
AT1G47830.1	Thale cress	mitochondrion	95.77	95.77
CDY63352	Canola	cytosol, mitochondrion	96.48	94.48
CDY70589	Canola	cytosol	79.58	94.17
TraesCS5A01G112300.2	Wheat	mitochondrion	92.96	92.31
CDY52072	Canola	cytosol	96.48	88.96
Bra027439.1-P	Field mustard	cytosol	96.48	88.96
CDY06725	Canola	cytosol	96.48	87.26
Bra015600.1-P	Field mustard	cytosol, mitochondrion	96.48	87.26
Zm00001d041778_P006	Maize	cytosol, mitochondrion	90.14	82.05
GSMUA_Achr8P19280_001	Banana	cytosol	96.48	81.07
CDX71554	Canola	cytosol	67.61	80.0
VIT_04s0023g03340.t01	Wine grape	cytosol	95.07	78.49
VIT_18s0001g14240.t01	Wine grape	cytosol	95.77	72.34
Os03t0783700-00	Rice	plasma membrane	54.23	47.83
Os08t0395300-01	Rice	cytosol, mitochondrion	47.18	46.85
Os10t0368400-01	Rice	cytosol, mitochondrion	45.07	44.76
Os03t0228400-01	Rice	cytosol, mitochondrion	42.25	36.14
Os01t0353600-00	Rice	mitochondrion	41.55	35.54

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	EntrezGene:4351755	ProteinID:ABA96138.1	EMBL:AK069232	InterPro:AP_complex_ssu
InterPro:AP_mu_sigma_su	ProteinID:BAF29406.1	ProteinID:BAT16301.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	InterPro:Longin-like_dom_sf	EnsemblPlantsGene:Os12g0207300	EnsemblPlants:Os12t0207300-01
PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	UniProt:Q2QW51	SUPFAM:SSF64356
UniParc:UPI00000A5821	RefSeq:XP_015618362.1	:	:	:	:

Description

Similar to Clathrin coat assembly protein AP17 (Clathrin coat associated protein AP17) (Plasma membrane adaptor AP-2 17 kDa protein) (HA2 17 kDa subunit) (Clathrin assembly protein 2 small chain). (Os12t0207300-01)

Coordinates

chr12:+:5602196..5606141

Molecular Weight (calculated)

17098.8 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.087

Length

142 amino acids

Sequence
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSMC VDITDNELAY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK LE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.