Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
MultiLoc:cytosol
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES16862 Sorghum cytosol 95.77 95.77
Os12t0207300-01 Rice plasma membrane 95.77 95.77
PGSC0003DMT400025529 Potato mitochondrion 95.77 95.77
Solyc04g081410.2.1 Tomato plastid 95.77 95.77
Zm00001d007270_P001 Maize mitochondrion 95.07 95.07
EES08264 Sorghum mitochondrion 95.07 95.07
CDY70589 Canola cytosol 80.28 95.0
TraesCS5D01G119700.1 Wheat mitochondrion 94.37 94.37
HORVU5Hr1G033310.1 Barley mitochondrion 94.37 94.37
TraesCS5B01G113000.1 Wheat cytosol 93.66 93.66
KRH05944 Soybean mitochondrion 93.66 93.66
KRH17427 Soybean mitochondrion 93.66 93.66
TraesCS5A01G112300.2 Wheat mitochondrion 90.14 89.51
Bra015600.1-P Field mustard cytosol, mitochondrion 97.89 88.53
CDY06725 Canola cytosol 97.89 88.53
Zm00001d041778_P006 Maize cytosol, mitochondrion 88.03 80.13
GSMUA_Achr8P19280_001 Banana cytosol 93.66 78.7
VIT_04s0023g03340.t01 Wine grape cytosol 92.96 76.74
VIT_18s0001g14240.t01 Wine grape cytosol 93.66 70.74
AT4G35410.2 Thale cress mitochondrion 53.52 46.91
AT2G17380.1 Thale cress cytosol, mitochondrion 52.82 46.58
AT2G19790.1 Thale cress mitochondrion 45.77 45.45
AT3G50860.1 Thale cress cytosol 40.14 34.34
Protein Annotations
MapMan:22.1.3.4Gene3D:3.30.450.60EntrezGene:841199UniProt:A0A178W398ProteinID:AAF99787.1ProteinID:AEE32220.1
EMBL:AK227317InterPro:AP_complex_ssuInterPro:AP_mu_sigma_suArrayExpress:AT1G47830EnsemblPlantsGene:AT1G47830RefSeq:AT1G47830
TAIR:AT1G47830RefSeq:AT1G47830-TAIR-GEnsemblPlants:AT1G47830.1TAIR:AT1G47830.1EMBL:BT003048GO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005886GO:GO:0005905
GO:GO:0006810GO:GO:0006886GO:GO:0006897GO:GO:0008150GO:GO:0008565GO:GO:0015031
GO:GO:0016020GO:GO:0016192InterPro:Longin-like_dom_sfRefSeq:NP_175219.1ProteinID:OAP12544.1PFAM:PF01217
PIRSF:PIRSF015588PO:PO:0000013PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016
PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123
PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009
PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032
PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100
PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281PANTHER:PTHR11753PANTHER:PTHR11753:SF17
UniProt:Q84WL9SUPFAM:SSF64356UniParc:UPI000000BEB1:::
Description
AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
Coordinates
chr1:-:17613029..17614986
Molecular Weight (calculated)
17067.7 Da
IEP (calculated)
6.513
GRAVY (calculated)
-0.073
Length
142 amino acids
Sequence
(BLAST)
001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.