CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 4
plasma membrane 2
golgi 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi, nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0207300-01	Rice	plasma membrane	100.0	100.0
EES08264	Sorghum	mitochondrion	98.59	98.59
TraesCS5D01G119700.1	Wheat	mitochondrion	97.18	97.18
HORVU5Hr1G033310.1	Barley	mitochondrion	97.18	97.18
KRH05944	Soybean	mitochondrion	97.18	97.18
KRH17427	Soybean	mitochondrion	97.18	97.18
TraesCS5B01G113000.1	Wheat	cytosol	96.48	96.48
Solyc04g081410.2.1	Tomato	plastid	96.48	96.48
PGSC0003DMT400025529	Potato	mitochondrion	96.48	96.48
AT1G47830.1	Thale cress	mitochondrion	95.77	95.77
CDY63352	Canola	cytosol, mitochondrion	96.48	94.48
CDY70589	Canola	cytosol	79.58	94.17
TraesCS5A01G112300.2	Wheat	mitochondrion	92.96	92.31
Bra027439.1-P	Field mustard	cytosol	96.48	88.96
CDY52072	Canola	cytosol	96.48	88.96
Bra015600.1-P	Field mustard	cytosol, mitochondrion	96.48	87.26
CDY06725	Canola	cytosol	96.48	87.26
Zm00001d041778_P006	Maize	cytosol, mitochondrion	90.14	82.05
GSMUA_Achr8P19280_001	Banana	cytosol	96.48	81.07
CDX71554	Canola	cytosol	67.61	80.0
VIT_04s0023g03340.t01	Wine grape	cytosol	95.07	78.49
VIT_18s0001g14240.t01	Wine grape	cytosol	95.77	72.34
KXG25094	Sorghum	cytosol, mitochondrion	46.48	46.15
EER93221	Sorghum	mitochondrion	50.7	44.72
EER92601	Sorghum	mitochondrion	42.96	36.75
KXG37427	Sorghum	cytosol, nucleus, plastid	55.63	29.48
OQU84502	Sorghum	mitochondrion	40.85	27.36

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	EntrezGene:8084806	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	UniProt:C5YTM2
EnsemblPlants:EES16862	ProteinID:EES16862	ProteinID:EES16862.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	EnsemblPlantsGene:SORBI_3008G073300	SUPFAM:SSF64356	UniParc:UPI00000A5821	RefSeq:XP_002443024.1

Description

hypothetical protein

Coordinates

chr8:-:10167688..10172586

Molecular Weight (calculated)

17098.8 Da

IEP (calculated)

6.240

GRAVY (calculated)

-0.087

Length

142 amino acids

Sequence
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEDSEKHK VEYEVHRLVV NRDPKFTNFV EFRTHKVIYR RYAGLFFSMC VDITDNELAY LECIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMGELEK LE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.