CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0207300-01	Rice	plasma membrane	94.48	96.48
EES16862	Sorghum	cytosol	94.48	96.48
Zm00001d007270_P001	Maize	mitochondrion	93.79	95.77
Solyc04g081410.2.1	Tomato	plastid	93.79	95.77
PGSC0003DMT400025529	Potato	mitochondrion	93.79	95.77
EES08264	Sorghum	mitochondrion	93.79	95.77
KRH05944	Soybean	mitochondrion	93.1	95.07
CDY70589	Canola	cytosol	78.62	95.0
TraesCS5D01G119700.1	Wheat	mitochondrion	92.41	94.37
TraesCS5B01G113000.1	Wheat	cytosol	92.41	94.37
KRH17427	Soybean	mitochondrion	92.41	94.37
HORVU5Hr1G033310.1	Barley	mitochondrion	92.41	94.37
CDY52072	Canola	cytosol	97.93	92.21
TraesCS5A01G112300.2	Wheat	mitochondrion	88.28	89.51
CDY06725	Canola	cytosol	95.86	88.53
CDX71554	Canola	cytosol	67.59	81.67
Zm00001d041778_P006	Maize	cytosol, mitochondrion	86.21	80.13
GSMUA_Achr8P19280_001	Banana	cytosol	93.1	79.88
VIT_04s0023g03340.t01	Wine grape	cytosol	93.1	78.49
VIT_18s0001g14240.t01	Wine grape	cytosol	93.1	71.81
CDY35888	Canola	mitochondrion	44.14	44.44
CDX82722	Canola	mitochondrion	44.14	44.44
CDY48729	Canola	mitochondrion	43.45	44.06
CDY03335	Canola	mitochondrion	43.45	44.06
CDY69066	Canola	cytosol	51.03	41.81
CDX69137	Canola	extracellular	49.66	38.92
CDX75500	Canola	cytosol	50.34	35.96
CDY50208	Canola	extracellular, plasma membrane	51.03	34.42
CDX90681	Canola	cytosol	38.62	33.53
CDY28984	Canola	cytosol	40.0	27.49
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	22.07	22.54

Protein Annotations

MapMan:22.1.3.4	Gene3D:3.30.450.60	GO:A0A078JES2	UniProt:A0A078JES2	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDY63352	ProteinID:CDY63352	ProteinID:CDY63352.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00039209001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	PANTHER:PTHR11753	PANTHER:PTHR11753:SF17	SUPFAM:SSF64356	UniParc:UPI0004EEB371	:

Description

BnaCnng41930DBnaCnng41930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JES2]

Coordinates

chrLK034286:-:22397..23920

Molecular Weight (calculated)

17497.3 Da

IEP (calculated)

6.512

GRAVY (calculated)

-0.048

Length

145 amino acids

Sequence
(BLAST)

001: MRLLIRFILL QNRQGKTRLA KYYVPLEESE KHKVEYEVHR LVVNRDSKFT NFVEFRTHKV IYRRYAGLFF SLCVDITDNE LAYLECIHLF VEILDHFFSN
101: VCELDLVFNF HKVYLILDEF ILAGELQETS KRAIIERMSE LEKLE

Best Arabidopsis Sequence Match ( AT1G47830.1 )
(BLAST)

001: MIRFILLQNR QGKTRLAKYY VPLEESEKHK VEYEVHRLVV NRDAKFTNFV EFRTHKVIYR RYAGLFFSVC VDITDNELAY LESIHLFVEI LDHFFSNVCE
101: LDLVFNFHKV YLILDEFILA GELQETSKRA IIERMSELEK LQ

Arabidopsis Description

AP17AP-2 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q84WL9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.