CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012884.1-P	Field mustard	cytosol	99.4	99.4
AT3G50860.1	Thale cress	cytosol	94.61	95.18
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	80.84	81.82
KRH69924	Soybean	cytosol, mitochondrion	77.84	78.31
CDY28984	Canola	cytosol	98.8	78.2
KRH08275	Soybean	cytosol, mitochondrion	76.65	77.11
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	73.65	74.1
Solyc02g085240.2.1	Tomato	cytosol	70.66	70.66
PGSC0003DMT400009269	Potato	cytosol	66.47	68.1
TraesCS4D01G235600.1	Wheat	cytosol	65.27	65.66
TraesCS4B01G234400.1	Wheat	cytosol	65.27	65.66
TraesCS4A01G078400.1	Wheat	cytosol	65.27	65.66
Os03t0228400-01	Rice	cytosol, mitochondrion	63.47	63.86
EER92601	Sorghum	mitochondrion	62.87	63.25
Os01t0353600-00	Rice	mitochondrion	61.08	61.45
Zm00001d004311_P001	Maize	extracellular	28.74	59.26
Zm00001d047992_P006	Maize	cytosol, mitochondrion	61.68	58.52
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	48.5	57.04
OQU84502	Sorghum	mitochondrion	58.08	45.75
Zm00001d010247_P001	Maize	extracellular	29.34	45.37
GSMUA_AchrUn_...	Banana	cytosol	43.71	40.56
CDY63352	Canola	cytosol, mitochondrion	33.53	38.62
CDX82722	Canola	mitochondrion	31.74	36.81
CDY35888	Canola	mitochondrion	31.74	36.81
CDX71554	Canola	cytosol	26.35	36.67
CDY70589	Canola	cytosol	26.35	36.67
CDY03335	Canola	mitochondrion	31.14	36.36
CDY52072	Canola	cytosol	33.53	36.36
CDY48729	Canola	mitochondrion	31.14	36.36
CDY06725	Canola	cytosol	32.93	35.03
CDY69066	Canola	cytosol	32.34	30.51
CDX69137	Canola	extracellular	31.14	28.11
CDX75500	Canola	cytosol	31.74	26.11
CDY50208	Canola	extracellular, plasma membrane	31.74	24.65
Zm00001d008712_P001	Maize	extracellular	31.74	24.31
Zm00001d041448_P001	Maize	plastid	34.13	20.07
Zm00001d042538_P001	Maize	plastid	34.13	19.13

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	GO:A0A078DN30	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDX90681	ProteinID:CDX90681	ProteinID:CDX90681.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117
GO:GO:0030123	EnsemblPlantsGene:GSBRNA2T00151344001	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989
PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI0004EE9858	:	:

Description

BnaA03g41000D

Coordinates

chrLK031863:-:1513775..1515242

Molecular Weight (calculated)

18857.8 Da

IEP (calculated)

4.711

GRAVY (calculated)

0.046

Length

167 amino acids

Sequence
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DFLPVEKQQE LIRGVFSVLS SRPENVSNFL EIDSLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHTVLD EIVFGGQVLE TRSDEVMKAV EEISKSEAAS NSISLVPKSV SGWRGGR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.