Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- plasma membrane 1
- mitochondrion 3
- nucleus 1
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
AT3G50860.1 | Thale cress | cytosol | 83.64 | 83.13 |
Bra012884.1-P | Field mustard | cytosol | 82.42 | 81.44 |
CDX90681 | Canola | cytosol | 81.82 | 80.84 |
KRH69924 | Soybean | cytosol, mitochondrion | 80.61 | 80.12 |
KRH08275 | Soybean | cytosol, mitochondrion | 79.39 | 78.92 |
GSMUA_Achr8P26380_001 | Banana | cytosol, mitochondrion | 78.79 | 78.31 |
TraesCS4D01G235600.1 | Wheat | cytosol | 71.52 | 71.08 |
TraesCS4B01G234400.1 | Wheat | cytosol | 71.52 | 71.08 |
Solyc02g085240.2.1 | Tomato | cytosol | 71.52 | 70.66 |
Os03t0228400-01 | Rice | cytosol, mitochondrion | 70.91 | 70.48 |
TraesCS4A01G078400.1 | Wheat | cytosol | 70.91 | 70.48 |
PGSC0003DMT400009269 | Potato | cytosol | 68.48 | 69.33 |
EER92601 | Sorghum | mitochondrion | 69.7 | 69.28 |
Bra036855.1-P | Field mustard | cytosol | 36.97 | 67.78 |
Os01t0353600-00 | Rice | mitochondrion | 67.88 | 67.47 |
Zm00001d004311_P001 | Maize | extracellular | 32.12 | 65.43 |
Zm00001d047992_P006 | Maize | cytosol, mitochondrion | 68.48 | 64.2 |
CDY28984 | Canola | cytosol | 81.82 | 63.98 |
CDX73778 | Canola | cytosol, endoplasmic reticulum, nucleus | 45.45 | 52.82 |
OQU84502 | Sorghum | mitochondrion | 65.45 | 50.94 |
Zm00001d010247_P001 | Maize | extracellular | 33.33 | 50.93 |
GSMUA_AchrUn_... | Banana | cytosol | 47.88 | 43.89 |
VIT_11s0016g02840.t01 | Wine grape | cytosol, mitochondrion | 30.91 | 37.5 |
VIT_16s0050g00660.t01 | Wine grape | golgi | 35.76 | 33.33 |
VIT_01s0127g00810.t01 | Wine grape | golgi | 35.76 | 33.15 |
VIT_04s0023g03340.t01 | Wine grape | cytosol | 33.94 | 32.56 |
VIT_18s0001g14240.t01 | Wine grape | cytosol | 35.15 | 30.85 |
Zm00001d008712_P001 | Maize | extracellular | 36.36 | 27.52 |
Zm00001d041448_P001 | Maize | plastid | 38.79 | 22.54 |
Zm00001d042538_P001 | Maize | plastid | 38.79 | 21.48 |
Protein Annotations
EntrezGene:100254708 | wikigene:100254708 | MapMan:22.1.5.4 | Gene3D:3.30.450.60 | EMBL:AM472026 | InterPro:APS3 |
InterPro:AP_complex_ssu | InterPro:AP_mu_sigma_su | ProteinID:CAN81505 | ProteinID:CAN81505.1 | ProteinID:CBI17519 | ProteinID:CBI17519.3 |
InterPro:Clathrin_sm-chain_CS | ncoils:Coil | UniProt:D7SPE0 | EMBL:FN594959 | GO:GO:0003674 | GO:GO:0005215 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 |
GO:GO:0008150 | GO:GO:0008565 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | GO:GO:0030117 |
GO:GO:0030123 | EntrezGene:LOC100254708 | wikigene:LOC100254708 | InterPro:Longin-like_dom_sf | PFAM:PF01217 | PIRSF:PIRSF015588 |
ScanProsite:PS00989 | PANTHER:PTHR11753 | PANTHER:PTHR11753:SF2 | SUPFAM:SSF64356 | UniParc:UPI0001983142 | ArrayExpress:VIT_04s0023g01770 |
EnsemblPlantsGene:VIT_04s0023g01770 | EnsemblPlants:VIT_04s0023g01770.t01 | unigene:Vvi.26449 | RefSeq:XP_002266832 | RefSeq:XP_002266832.1 | RefSeq:XP_002266832.3 |
Description
AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:D7SPE0]
Coordinates
chr4:+:18349918..18353490
Molecular Weight (calculated)
18845.8 Da
IEP (calculated)
4.838
GRAVY (calculated)
0.075
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRAVIVMNT QGKPRLTKFY DYMPPEKQQE LIRRVFGVLC SRAENVSNFV EADSVFGPDT RLVYKHYATL YFVFVFDSSE NELAMLDLIQ VLVETLDKCF
101: KNVCELDIVF NYSKLHTILD EIIFGGQVLE TSSAEVMKAV EEISRLETAS NTITLVPKSI SGWRS
101: KNVCELDIVF NYSKLHTILD EIIFGGQVLE TSSAEVMKAV EEISRLETAS NTITLVPKSI SGWRS
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Arabidopsis Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.