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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • plasma membrane 1
  • mitochondrion 3
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT3G50860.1 Thale cress cytosol 83.64 83.13
Bra012884.1-P Field mustard cytosol 82.42 81.44
CDX90681 Canola cytosol 81.82 80.84
KRH69924 Soybean cytosol, mitochondrion 80.61 80.12
KRH08275 Soybean cytosol, mitochondrion 79.39 78.92
GSMUA_Achr8P26380_001 Banana cytosol, mitochondrion 78.79 78.31
TraesCS4D01G235600.1 Wheat cytosol 71.52 71.08
TraesCS4B01G234400.1 Wheat cytosol 71.52 71.08
Solyc02g085240.2.1 Tomato cytosol 71.52 70.66
Os03t0228400-01 Rice cytosol, mitochondrion 70.91 70.48
TraesCS4A01G078400.1 Wheat cytosol 70.91 70.48
PGSC0003DMT400009269 Potato cytosol 68.48 69.33
EER92601 Sorghum mitochondrion 69.7 69.28
Bra036855.1-P Field mustard cytosol 36.97 67.78
Os01t0353600-00 Rice mitochondrion 67.88 67.47
Zm00001d004311_P001 Maize extracellular 32.12 65.43
Zm00001d047992_P006 Maize cytosol, mitochondrion 68.48 64.2
CDY28984 Canola cytosol 81.82 63.98
CDX73778 Canola cytosol, endoplasmic reticulum, nucleus 45.45 52.82
OQU84502 Sorghum mitochondrion 65.45 50.94
Zm00001d010247_P001 Maize extracellular 33.33 50.93
GSMUA_AchrUn_... Banana cytosol 47.88 43.89
VIT_11s0016g02840.t01 Wine grape cytosol, mitochondrion 30.91 37.5
VIT_16s0050g00660.t01 Wine grape golgi 35.76 33.33
VIT_01s0127g00810.t01 Wine grape golgi 35.76 33.15
VIT_04s0023g03340.t01 Wine grape cytosol 33.94 32.56
VIT_18s0001g14240.t01 Wine grape cytosol 35.15 30.85
Zm00001d008712_P001 Maize extracellular 36.36 27.52
Zm00001d041448_P001 Maize plastid 38.79 22.54
Zm00001d042538_P001 Maize plastid 38.79 21.48
Protein Annotations
EntrezGene:100254708wikigene:100254708MapMan:22.1.5.4Gene3D:3.30.450.60EMBL:AM472026InterPro:APS3
InterPro:AP_complex_ssuInterPro:AP_mu_sigma_suProteinID:CAN81505ProteinID:CAN81505.1ProteinID:CBI17519ProteinID:CBI17519.3
InterPro:Clathrin_sm-chain_CSncoils:CoilUniProt:D7SPE0EMBL:FN594959GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006810GO:GO:0006886
GO:GO:0008150GO:GO:0008565GO:GO:0015031GO:GO:0016020GO:GO:0016192GO:GO:0030117
GO:GO:0030123EntrezGene:LOC100254708wikigene:LOC100254708InterPro:Longin-like_dom_sfPFAM:PF01217PIRSF:PIRSF015588
ScanProsite:PS00989PANTHER:PTHR11753PANTHER:PTHR11753:SF2SUPFAM:SSF64356UniParc:UPI0001983142ArrayExpress:VIT_04s0023g01770
EnsemblPlantsGene:VIT_04s0023g01770EnsemblPlants:VIT_04s0023g01770.t01unigene:Vvi.26449RefSeq:XP_002266832RefSeq:XP_002266832.1RefSeq:XP_002266832.3
Description
AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:D7SPE0]
Coordinates
chr4:+:18349918..18353490
Molecular Weight (calculated)
18845.8 Da
IEP (calculated)
4.838
GRAVY (calculated)
0.075
Length
165 amino acids
Sequence
(BLAST)
001: MIRAVIVMNT QGKPRLTKFY DYMPPEKQQE LIRRVFGVLC SRAENVSNFV EADSVFGPDT RLVYKHYATL YFVFVFDSSE NELAMLDLIQ VLVETLDKCF
101: KNVCELDIVF NYSKLHTILD EIIFGGQVLE TSSAEVMKAV EEISRLETAS NTITLVPKSI SGWRS
Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)
001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR
Arabidopsis Description
AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.