CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, endoplasmic reticulum, plastid
BaCelLo:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036855.1-P	Field mustard	cytosol	50.7	80.0
AT3G50860.1	Thale cress	cytosol	59.15	50.6
CDX90681	Canola	cytosol	57.04	48.5
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	52.82	45.45
KRH08275	Soybean	cytosol, mitochondrion	52.82	45.18
KRH69924	Soybean	cytosol, mitochondrion	51.41	43.98
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	47.89	40.96
Solyc02g085240.2.1	Tomato	cytosol	45.77	38.92
CDY28984	Canola	cytosol	57.04	38.39
PGSC0003DMT400009269	Potato	cytosol	43.66	38.04
Os01t0353600-00	Rice	mitochondrion	40.85	34.94
TraesCS4D01G235600.1	Wheat	cytosol	39.44	33.73
Os03t0228400-01	Rice	cytosol, mitochondrion	39.44	33.73
TraesCS4B01G234400.1	Wheat	cytosol	38.73	33.13
TraesCS4A01G078400.1	Wheat	cytosol	38.73	33.13
EER92601	Sorghum	mitochondrion	38.03	32.53
Zm00001d004311_P001	Maize	extracellular	17.61	30.86
Zm00001d047992_P006	Maize	cytosol, mitochondrion	36.62	29.55
CDY70589	Canola	cytosol	22.54	26.67
Zm00001d010247_P001	Maize	extracellular	19.72	25.93
OQU84502	Sorghum	mitochondrion	35.21	23.58
CDX71554	Canola	cytosol	19.01	22.5
CDY63352	Canola	cytosol, mitochondrion	22.54	22.07
CDY03335	Canola	mitochondrion	21.83	21.68
CDY48729	Canola	mitochondrion	21.83	21.68
CDX82722	Canola	mitochondrion	21.83	21.53
CDY35888	Canola	mitochondrion	21.83	21.53
CDY52072	Canola	cytosol	22.54	20.78
CDY06725	Canola	cytosol	22.54	20.38
CDY69066	Canola	cytosol	23.94	19.21
CDX69137	Canola	extracellular	22.54	17.3
GSMUA_AchrUn_...	Banana	cytosol	21.13	16.67
CDY50208	Canola	extracellular, plasma membrane	23.94	15.81
CDX75500	Canola	cytosol	22.54	15.76
Zm00001d008712_P001	Maize	extracellular	23.24	15.14
Zm00001d041448_P001	Maize	plastid	23.94	11.97
Zm00001d042538_P001	Maize	plastid	23.94	11.41

Protein Annotations

Gene3D:3.30.450.60	MapMan:35.1	GO:A0A078CFI3	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
EnsemblPlants:CDX73778	ProteinID:CDX73778	ProteinID:CDX73778.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0030123	EnsemblPlantsGene:GSBRNA2T00109397001	InterPro:Longin-like_dom_sf	PFAM:PF01217
PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI0004EE11B5	:	:

Description

BnaC08g22250D

Coordinates

chrLK031799:-:2708947..2710679

Molecular Weight (calculated)

16253.1 Da

IEP (calculated)

6.755

GRAVY (calculated)

0.312

Length

142 amino acids

Sequence
(BLAST)

001: MRSEELEILR FLDWREAIRA NPRRICSIVQ WIHCLARILG LYTNTMLLST LCLFLMDQRM SFAVLDLIHV LVEMLDKCFS NVCELFNYSK MHTVLDEIVF
101: GGQVLETSST EVIKAVENIS KLEAASNAIS LVPKSVSGWR GR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.