CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra011613.1-P	Field mustard	cytosol	99.51	99.51
CDX69137	Canola	extracellular	85.71	94.05
AT4G35410.2	Thale cress	mitochondrion	74.38	93.21
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	68.97	86.96
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	68.97	86.96
Os03t0783700-00	Rice	plasma membrane	68.97	86.96
CDY69066	Canola	cytosol	74.88	85.88
KRH17634	Soybean	endoplasmic reticulum	67.0	84.47
KRG90038	Soybean	cytosol, mitochondrion	67.0	84.47
HORVU5Hr1G102930.4	Barley	extracellular, golgi	69.46	78.33
HORVU5Hr1G102770.1	Barley	extracellular, golgi	69.46	78.33
CDY50208	Canola	extracellular, plasma membrane	76.35	72.09
Zm00001d013128_P004	Maize	cytosol, plastid	67.0	71.96
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	66.5	68.88
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	69.46	67.14
KXG37427	Sorghum	cytosol, nucleus, plastid	70.44	53.36
GSMUA_Achr9P11170_001	Banana	extracellular	69.46	51.84
CDY63352	Canola	cytosol, mitochondrion	35.96	50.34
CDY70589	Canola	cytosol	29.56	50.0
CDX71554	Canola	cytosol	28.57	48.33
Zm00001d034337_P005	Maize	cytosol	74.38	48.09
CDY52072	Canola	cytosol	35.96	47.4
CDY06725	Canola	cytosol	35.96	46.5
CDY35888	Canola	mitochondrion	29.56	41.67
CDX82722	Canola	mitochondrion	29.56	41.67
CDY48729	Canola	mitochondrion	29.06	41.26
CDY03335	Canola	mitochondrion	29.06	41.26
CDX90681	Canola	cytosol	26.11	31.74
CDY28984	Canola	cytosol	25.62	24.64
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	15.76	22.54

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	GO:A0A078CF73	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlants:CDX75500
ProteinID:CDX75500	ProteinID:CDX75500.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	EnsemblPlantsGene:GSBRNA2T00121398001	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	UniParc:UPI0004EE92C5	:

Description

BnaA01g02020D

Coordinates

chrLK031804:+:1406362..1407755

Molecular Weight (calculated)

23332.4 Da

IEP (calculated)

7.071

GRAVY (calculated)

0.041

Length

203 amino acids

Sequence
(BLAST)

001: MDRLMSLCVP SLDLRKHRSL IASLEIQSCY LLSEHSCLAS GFGSIHFVLL VSRQGKVRLT KWYSPYTQKE RSKVIRELSG VILNRGPKLC NFVEWRGYKV
101: VYKRYASLYF CMCIDAEDNE LEVLEIIHHY VEILDRYFGS VCELDLIFNF HKAYYILDEL LIAGEIQESS KKTVARIISA QDQMVEAAKE EAGSISYIIA
201: QAS

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.