Factsheet for Bra011613.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75500	Canola	cytosol	99.51	99.51
CDX69137	Canola	extracellular	85.71	94.05
Bra002054.1-P	Field mustard	cytosol, mitochondrion	74.38	93.79
AT4G35410.2	Thale cress	mitochondrion	74.38	93.21
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	68.97	86.96
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	68.97	86.96
Os03t0783700-00	Rice	plasma membrane	68.97	86.96
KRH17634	Soybean	endoplasmic reticulum	67.0	84.47
KRG90038	Soybean	cytosol, mitochondrion	67.0	84.47
HORVU5Hr1G102930.4	Barley	extracellular, golgi	69.46	78.33
HORVU5Hr1G102770.1	Barley	extracellular, golgi	69.46	78.33
Zm00001d013128_P004	Maize	cytosol, plastid	67.0	71.96
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	66.5	68.88
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	69.46	67.14
KXG37427	Sorghum	cytosol, nucleus, plastid	70.44	53.36
GSMUA_Achr9P11170_001	Banana	extracellular	69.46	51.84
Zm00001d034337_P005	Maize	cytosol	74.38	48.09
Bra027439.1-P	Field mustard	cytosol	35.96	47.4
Bra015600.1-P	Field mustard	cytosol, mitochondrion	35.96	46.5
Bra039020.1-P	Field mustard	mitochondrion	29.56	41.96
Bra036702.1-P	Field mustard	mitochondrion	29.06	41.26
Bra012884.1-P	Field mustard	cytosol	26.11	31.74
Bra036855.1-P	Field mustard	cytosol	10.84	24.44

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra011613	EnsemblPlants:Bra011613.1
EnsemblPlants:Bra011613.1-P	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	InterPro:Longin-like_dom_sf	UniProt:M4D556
PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356
UniParc:UPI0002546F74	:	:	:	:	:

Description

AT4G35410 (E=2e-083) | clathrin adaptor complex small chain family protein

Coordinates

chrA01:-:1411073..1412155

Molecular Weight (calculated)

23376.4 Da

IEP (calculated)

6.769

GRAVY (calculated)

0.015

Length

203 amino acids

Sequence
(BLAST)

001: MDRLMSLCVP SLDLRKHRSL IDSLEIQSCY LLSEHSCLAS GFGSIHFVLL VSRQGKVRLT KWYSPYTQKE RSKVIRELSG VILNRGPKLC NFVEWRGYKV
101: VYKRYASLYF CMCIDAEDNE LEVLEIIHHY VEILDRYFGS VCELDLIFNF HKAYYILDEL LIAGEIQESS KKTVARIISA QDQMVEAAKE EAGSISYIIA
201: QAS

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.