Factsheet for Zm00001d013128_P004

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011676_P001
Zm00001d036168_P001
Zm00001d043726_P001
Zm00001d052338_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	Zm00001d011676_P001	AT1G60780.1	23543752
AT2G17380.1	Zm00001d036168_P001	AT1G60780.1	23543752
AT2G17380.1	Zm00001d043726_P001	AT1G60780.1	23543752
AT2G17380.1	Zm00001d052338_P001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0783700-00	Rice	plasma membrane	80.42	94.41
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	80.42	94.41
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	80.42	94.41
Solyc11g005220.1.1	Tomato	nucleus	77.25	90.68
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	77.25	90.68
KRG90038	Soybean	cytosol, mitochondrion	75.13	88.2
KRH17634	Soybean	endoplasmic reticulum	75.13	88.2
Bra002054.1-P	Field mustard	cytosol, mitochondrion	74.6	87.58
AT2G17380.1	Thale cress	cytosol, mitochondrion	74.07	86.96
AT4G35410.2	Thale cress	mitochondrion	73.55	85.8
HORVU5Hr1G102770.1	Barley	extracellular, golgi	79.89	83.89
HORVU5Hr1G102930.4	Barley	extracellular, golgi	79.89	83.89
VIT_16s0050g00660.t01	Wine grape	golgi	77.78	83.05
VIT_01s0127g00810.t01	Wine grape	golgi	77.78	82.58
CDY69066	Canola	cytosol	74.6	79.66
KRH73467	Soybean	cytosol, mitochondrion	67.2	74.71
PGSC0003DMT400015459	Potato	cytosol	55.56	73.43
CDX69137	Canola	extracellular	71.43	72.97
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	73.02	70.41
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	77.78	70.0
CDX75500	Canola	cytosol	71.96	67.0
Bra011613.1-P	Field mustard	cytosol	71.96	67.0
CDY50208	Canola	extracellular, plasma membrane	74.07	65.12
Zm00001d034595_P001	Maize	cytosol	59.79	63.48
KXG37427	Sorghum	cytosol, nucleus, plastid	82.01	57.84
Zm00001d007270_P001	Maize	mitochondrion	41.27	54.93
GSMUA_Achr9P11170_001	Banana	extracellular	74.07	51.47
Zm00001d034337_P005	Maize	cytosol	81.48	49.04
Zm00001d041778_P006	Maize	cytosol, mitochondrion	40.21	48.72
Zm00001d050256_P001	Maize	cytosol, mitochondrion	31.75	41.96
Zm00001d004311_P001	Maize	extracellular	15.87	37.04
Zm00001d047992_P006	Maize	cytosol, mitochondrion	30.69	32.95
Zm00001d010247_P001	Maize	extracellular	18.52	32.41
Zm00001d008712_P001	Maize	extracellular	20.63	17.89
Zm00001d041448_P001	Maize	plastid	22.75	15.14
Zm00001d042538_P001	Maize	plastid	23.81	15.1

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	UniProt:A0A1D6GG67	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	ProteinID:AQK62544.1
ProteinID:AQK62546.1	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	UniParc:UPI000842F48C
EnsemblPlantsGene:Zm00001d013128	EnsemblPlants:Zm00001d013128_P004	EnsemblPlants:Zm00001d013128_T004	:	:	:

Description

AP-1 complex subunit sigma-2

Coordinates

chr5:+:5189454..5192155

Molecular Weight (calculated)

21829.5 Da

IEP (calculated)

8.462

GRAVY (calculated)

-0.054

Length

189 amino acids

Sequence
(BLAST)

001: MVRSAPLLPW SYDQCPCVLR ARTVHVGSCR LISCLISRQG KVRLTKWYSP YTQKERTKVI RELSGLVLTR GPKLCNFVEW RGYKVVYRRY ASLYFCMRID
101: ADDNELEVLE IIHHFVEILD RYFGSVCELD LIFNFHKAYY ILDEILIAGE LQESSKKNVA RLIATQDSLV EAAKEEASSI SNIIAQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.