Factsheet for Zm00001d050256_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25094	Sorghum	cytosol, mitochondrion	99.3	99.3
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	97.9	97.9
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	97.9	97.9
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	97.2	97.2
Os08t0395300-01	Rice	cytosol, mitochondrion	97.2	97.2
Os10t0368400-01	Rice	cytosol, mitochondrion	94.41	94.41
GSMUA_Achr4P10500_001	Banana	mitochondrion	92.31	91.67
KRH49010	Soybean	mitochondrion	90.91	90.91
KRH74193	Soybean	mitochondrion	90.91	90.91
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	85.31	89.71
Bra039020.1-P	Field mustard	mitochondrion	88.11	88.11
PGSC0003DMT400074468	Potato	mitochondrion	88.11	88.11
Solyc05g026130.2.1	Tomato	plastid	88.11	88.11
AT2G19790.1	Thale cress	mitochondrion	88.11	88.11
CDY35888	Canola	mitochondrion	88.11	87.5
CDX82722	Canola	mitochondrion	88.11	87.5
Bra036702.1-P	Field mustard	mitochondrion	87.41	87.41
CDY48729	Canola	mitochondrion	87.41	87.41
CDY03335	Canola	mitochondrion	87.41	87.41
KRH60179	Soybean	cytosol	46.85	74.44
Zm00001d007270_P001	Maize	mitochondrion	46.15	46.48
Zm00001d041778_P006	Maize	cytosol, mitochondrion	44.06	40.38
Zm00001d004311_P001	Maize	extracellular	21.68	38.27
Zm00001d013128_P004	Maize	cytosol, plastid	41.96	31.75
Zm00001d010247_P001	Maize	extracellular	23.78	31.48
Zm00001d047992_P006	Maize	cytosol, mitochondrion	35.66	28.98
Zm00001d034595_P001	Maize	cytosol	31.47	25.28
Zm00001d034337_P005	Maize	cytosol	41.96	19.11
Zm00001d008712_P001	Maize	extracellular	25.87	16.97
Zm00001d041448_P001	Maize	plastid	26.57	13.38
Zm00001d042538_P001	Maize	plastid	26.57	12.75

Protein Annotations

EntrezGene:100285322	MapMan:22.5.2.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	ProteinID:AQK52210.1
UniProt:B4FTQ9	EMBL:BT040497	EMBL:EU971773	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
PANTHER:PTHR11753	PANTHER:PTHR11753:SF4	SUPFAM:SSF64356	UniParc:UPI000151E26B	EnsemblPlantsGene:Zm00001d050256	EnsemblPlants:Zm00001d050256_P001
EnsemblPlants:Zm00001d050256_T001	:	:	:	:	:

Description

AP-4 complex subunit sigma

Coordinates

chr4:+:76976633..76985641

Molecular Weight (calculated)

16908.6 Da

IEP (calculated)

5.928

GRAVY (calculated)

-0.078

Length

143 amino acids

Sequence
(BLAST)

001: MTIRFVLFVN KQGQTRLAQY YEHLSLDERR ALEGEIVRKC LARTDQQCSF VEHRNYKVVY RRYASLFFLV GVDSDENELA ILEFIHLLVE TMDRHFGNVC
101: ELDIMFHLEK VHFMLEEMVM NGCIVETSKQ NILAPIQLME KTS

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.