Factsheet for Bra036702.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48729	Canola	mitochondrion	100.0	100.0
CDY03335	Canola	mitochondrion	100.0	100.0
AT2G19790.1	Thale cress	mitochondrion	99.3	99.3
Bra039020.1-P	Field mustard	mitochondrion	99.3	99.3
PGSC0003DMT400074468	Potato	mitochondrion	93.01	93.01
KRH74193	Soybean	mitochondrion	93.01	93.01
KRH49010	Soybean	mitochondrion	93.01	93.01
Solyc05g026130.2.1	Tomato	plastid	93.01	93.01
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	87.41	91.91
GSMUA_Achr4P10500_001	Banana	mitochondrion	90.91	90.28
TraesCS6A01G113800.1	Wheat	cytosol, mitochondrion	88.11	88.11
TraesCS6B01G140700.1	Wheat	cytosol, mitochondrion	88.11	88.11
TraesCS6D01G101600.1	Wheat	cytosol, mitochondrion	88.11	88.11
Zm00001d050256_P001	Maize	cytosol, mitochondrion	87.41	87.41
KXG25094	Sorghum	cytosol, mitochondrion	87.41	87.41
Os08t0395300-01	Rice	cytosol, mitochondrion	86.71	86.71
Os10t0368400-01	Rice	cytosol, mitochondrion	85.31	85.31
KRH60179	Soybean	cytosol	46.15	73.33
Bra027439.1-P	Field mustard	cytosol	44.06	40.91
Bra015600.1-P	Field mustard	cytosol, mitochondrion	44.76	40.76
Bra002054.1-P	Field mustard	cytosol, mitochondrion	39.86	35.4
Bra012884.1-P	Field mustard	cytosol	36.36	31.14
Bra011613.1-P	Field mustard	cytosol	41.26	29.06
Bra036855.1-P	Field mustard	cytosol	16.78	26.67

Protein Annotations

MapMan:22.5.2.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra036702	EnsemblPlants:Bra036702.1
EnsemblPlants:Bra036702.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	InterPro:Longin-like_dom_sf	UniProt:M4F6J2	PFAM:PF01217	PIRSF:PIRSF015588	PANTHER:PTHR11753
PANTHER:PTHR11753:SF4	SUPFAM:SSF64356	UniParc:UPI00019AA981	:	:	:

Description

AT2G19790 (E=1e-079) | clathrin adaptor complex small chain family protein

Coordinates

chrA09:+:5538273..5539060

Molecular Weight (calculated)

16920.7 Da

IEP (calculated)

5.926

GRAVY (calculated)

-0.106

Length

143 amino acids

Sequence
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEQRR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Best Arabidopsis Sequence Match ( AT2G19790.1 )
(BLAST)

001: MGIRFILMVN KQGQTRLAQY YEWLTLEERR ALEGEIVRKC LARNDQQCSF VEHRNYKIVY RRYASLFFMV GVDDDENELA ILEFIHLLVE TMDKHFGNVC
101: ELDIMFHLEK AHFMLEEMVM NGCIVETSKA NILSPIQLMD KAH

Arabidopsis Description

AP-4 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:O82201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.