Factsheet for Bra036855.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	80.0	50.7
AT3G50860.1	Thale cress	cytosol	77.78	42.17
Bra012884.1-P	Field mustard	cytosol	76.67	41.32
KRH08275	Soybean	cytosol, mitochondrion	68.89	37.35
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	67.78	36.97
KRH69924	Soybean	cytosol, mitochondrion	67.78	36.75
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	62.22	33.73
Solyc02g085240.2.1	Tomato	cytosol	55.56	29.94
PGSC0003DMT400009269	Potato	cytosol	53.33	29.45
Os03t0228400-01	Rice	cytosol, mitochondrion	50.0	27.11
TraesCS4D01G235600.1	Wheat	cytosol	50.0	27.11
TraesCS4B01G234400.1	Wheat	cytosol	50.0	27.11
TraesCS4A01G078400.1	Wheat	cytosol	50.0	27.11
EER92601	Sorghum	mitochondrion	48.89	26.51
Os01t0353600-00	Rice	mitochondrion	48.89	26.51
Zm00001d004311_P001	Maize	extracellular	23.33	25.93
Zm00001d047992_P006	Maize	cytosol, mitochondrion	47.78	24.43
Zm00001d010247_P001	Maize	extracellular	25.56	21.3
OQU84502	Sorghum	mitochondrion	46.67	19.81
Bra027439.1-P	Field mustard	cytosol	28.89	16.88
Bra039020.1-P	Field mustard	mitochondrion	26.67	16.78
Bra036702.1-P	Field mustard	mitochondrion	26.67	16.78
Bra015600.1-P	Field mustard	cytosol, mitochondrion	28.89	16.56
Bra002054.1-P	Field mustard	cytosol, mitochondrion	25.56	14.29
GSMUA_AchrUn_...	Banana	cytosol	23.33	11.67
Bra011613.1-P	Field mustard	cytosol	24.44	10.84
Zm00001d008712_P001	Maize	extracellular	25.56	10.55
Zm00001d041448_P001	Maize	plastid	25.56	8.1
Zm00001d042538_P001	Maize	plastid	25.56	7.72

Protein Annotations

Gene3D:3.30.450.60	MapMan:35.1	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	EnsemblPlantsGene:Bra036855
EnsemblPlants:Bra036855.1	EnsemblPlants:Bra036855.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0016020	GO:GO:0016192	GO:GO:0030123	InterPro:Longin-like_dom_sf	UniProt:M4F6Z5	PFAM:PF01217
PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	UniParc:UPI0002542BF6	:	:

Description

AT3G50860 (E=6e-034) | clathrin adaptor complex small chain family protein

Coordinates

chrA09:+:25387233..25387815

Molecular Weight (calculated)

9920.0 Da

IEP (calculated)

4.386

GRAVY (calculated)

0.244

Length

90 amino acids

Sequence
(BLAST)

1: MTLLLSPADV KYMNVLVETL DKCFSNVCEL DIVLNYSKMH TVLDEIVFGD QVLETSSTEV IKAVEDISKL EAASNAISLV PKSVSGWRGR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.