Factsheet for Solyc02g085240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
plasma membrane 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009269	Potato	cytosol	93.41	95.71
KRH08275	Soybean	cytosol, mitochondrion	71.86	72.29
KRH69924	Soybean	cytosol, mitochondrion	71.26	71.69
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	70.66	71.52
Bra012884.1-P	Field mustard	cytosol	71.26	71.26
AT3G50860.1	Thale cress	cytosol	70.66	71.08
CDX90681	Canola	cytosol	70.66	70.66
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	69.46	69.88
EER92601	Sorghum	mitochondrion	65.27	65.66
TraesCS4B01G234400.1	Wheat	cytosol	65.27	65.66
TraesCS4A01G078400.1	Wheat	cytosol	65.27	65.66
Solyc01g109640.2.1	Tomato	cytosol	64.67	65.45
TraesCS4D01G235600.1	Wheat	cytosol	64.67	65.06
Os03t0228400-01	Rice	cytosol, mitochondrion	62.87	63.25
Os01t0353600-00	Rice	mitochondrion	59.88	60.24
Zm00001d004311_P001	Maize	extracellular	28.74	59.26
Zm00001d047992_P006	Maize	cytosol, mitochondrion	62.28	59.09
CDY28984	Canola	cytosol	70.66	55.92
Bra036855.1-P	Field mustard	cytosol	29.94	55.56
OQU84502	Sorghum	mitochondrion	61.68	48.58
Zm00001d010247_P001	Maize	extracellular	29.94	46.3
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	38.92	45.77
GSMUA_AchrUn_...	Banana	cytosol	45.51	42.22
Solyc04g081410.2.1	Tomato	plastid	32.93	38.73
Solyc11g005220.1.1	Tomato	nucleus	32.93	34.16
Solyc05g026130.2.1	Tomato	plastid	26.95	31.47
Zm00001d008712_P001	Maize	extracellular	33.53	25.69
Zm00001d041448_P001	Maize	plastid	35.93	21.13
Zm00001d042538_P001	Maize	plastid	35.93	20.13

Protein Annotations

MapMan:22.1.5.4	Gene3D:3.30.450.60	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	UniProt:K4BB36	InterPro:Longin-like_dom_sf	PFAM:PF01217
PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc02g085240.2
EnsemblPlants:Solyc02g085240.2.1	UniParc:UPI000276904A	:	:	:	:

Description

No Description!

Coordinates

chr2:+:48208160..48210585

Molecular Weight (calculated)

19206.3 Da

IEP (calculated)

5.271

GRAVY (calculated)

0.113

Length

167 amino acids

Sequence
(BLAST)

001: MIKAVMVINT FGKPRLSKFY EFQPVEKQQE LIRHVYTVLS NRPDNVSNFI RSLGAIFGPD TRLVYKHYAT LYFVFLFDNS ENELAMLDLI QVFVETLDKC
101: FRSVCELDVV FNYSKMHIIL DEIILGGQVL ETDSVEVVKA VEEISKLEST TSAGTLINKS IPSWWAR

Best Arabidopsis Sequence Match ( AT3G50860.1 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISKLEAAS NSISLVPKSV SGWRGR

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.