Factsheet for GSMUA_AchrUn_randomP15460_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d004311_P001	Maize	extracellular	27.78	61.73
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	50.0	54.22
TraesCS4B01G234400.1	Wheat	cytosol	45.0	48.8
TraesCS4D01G235600.1	Wheat	cytosol	44.44	48.19
TraesCS4A01G078400.1	Wheat	cytosol	44.44	48.19
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	43.89	47.88
EER92601	Sorghum	mitochondrion	43.89	47.59
Zm00001d010247_P001	Maize	extracellular	28.33	47.22
Os03t0228400-01	Rice	cytosol, mitochondrion	43.33	46.99
Solyc02g085240.2.1	Tomato	cytosol	42.22	45.51
Os01t0353600-00	Rice	mitochondrion	41.67	45.18
PGSC0003DMT400009269	Potato	cytosol	40.56	44.79
AT3G50860.1	Thale cress	cytosol	41.11	44.58
Bra012884.1-P	Field mustard	cytosol	41.11	44.31
Zm00001d047992_P006	Maize	cytosol, mitochondrion	42.78	43.75
CDX90681	Canola	cytosol	40.56	43.71
KRH08275	Soybean	cytosol, mitochondrion	38.89	42.17
KRH69924	Soybean	cytosol, mitochondrion	38.33	41.57
Solyc01g109640.2.1	Tomato	cytosol	37.22	40.61
CDY28984	Canola	cytosol	42.78	36.49
OQU84502	Sorghum	mitochondrion	40.56	34.43
Zm00001d008712_P001	Maize	extracellular	32.22	26.61
PGSC0003DMT400001875	Potato	cytosol	23.89	25.6
GSMUA_Achr4P10500_001	Banana	mitochondrion	19.44	24.31
Bra036855.1-P	Field mustard	cytosol	11.67	23.33
CDX73778	Canola	cytosol, endoplasmic reticulum, nucleus	16.67	21.13
Zm00001d041448_P001	Maize	plastid	33.33	21.13
GSMUA_Achr8P19280_001	Banana	cytosol	19.44	20.71
Zm00001d042538_P001	Maize	plastid	33.89	20.47
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	20.0	18.37
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	21.11	18.1
GSMUA_Achr9P11170_001	Banana	extracellular	21.11	13.97

Protein Annotations

Gene3D:3.30.450.60	MapMan:35.1	InterPro:APS3	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	GO:GO:0030123	EnsemblPlantsGene:GSMUA_AchrUn_randomG15460_001	EnsemblPlants:GSMUA_AchrUn_randomP15460_001	EnsemblPlants:GSMUA_AchrUn_randomT15460_001
InterPro:Longin-like_dom_sf	UniProt:M0U9F5	PFAM:PF01217	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF2
SUPFAM:SSF64356	UniParc:UPI000294A9E0	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG15460_001]

Coordinates

chrchrUn_random:-:73102739..73111555

Molecular Weight (calculated)

20663.7 Da

IEP (calculated)

6.514

GRAVY (calculated)

-0.253

Length

180 amino acids

Sequence
(BLAST)

001: MKWEAIETKM LRRRKRDQET IVYLASDWLT HIHLRQDQKL VSSSLVRETM ASPAPSSFMT SGPPEKQQEL IRSVFTVLSG RPDNVSNFVE ADAIFGSGTR
101: LVYKHLATLY FVFVFDGCEN ELPMLDLSQV PVETLDRCFK NVGELDIVFN FNKKAETGST RFHVNYANVD FLFPDAYCPR

Best Arabidopsis Sequence Match ( AT3G50860.2 )
(BLAST)

001: MIKAVMMMNT QGKPRLAKFY DYLPVEKQQE LIRGVFSVLC SRPENVSNFL EIESLFGPDS RLVYKHYATL YFVLVFDGSE NELAMLDLIQ VLVETLDKCF
101: SNVCELDIVF NYSKMHAVLD EIVFGGQVLE TSSAEVMKAV EEISK

Arabidopsis Description

AP-3 complex subunit sigma [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.