Factsheet for GSMUA_Achr8P15550_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P25430_001
GSMUA_Achr2P06510_001
GSMUA_Achr7P17600_001
GSMUA_Achr8P31910_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	GSMUA_Achr1P25430_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr2P06510_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr7P17600_001	AT1G60780.1	23543752
AT2G17380.1	GSMUA_Achr8P31910_001	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0783700-00	Rice	plasma membrane	72.45	88.2
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	71.43	86.96
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	71.43	86.96
Solyc11g005220.1.1	Tomato	nucleus	70.92	86.34
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	70.41	85.71
KRH17634	Soybean	endoplasmic reticulum	69.9	85.09
KRG90038	Soybean	cytosol, mitochondrion	69.9	85.09
AT4G35410.2	Thale cress	mitochondrion	69.39	83.95
Bra002054.1-P	Field mustard	cytosol, mitochondrion	68.88	83.85
AT2G17380.1	Thale cress	cytosol, mitochondrion	68.88	83.85
VIT_01s0127g00810.t01	Wine grape	golgi	72.96	80.34
VIT_16s0050g00660.t01	Wine grape	golgi	72.45	80.23
HORVU5Hr1G102930.4	Barley	extracellular, golgi	71.94	78.33
HORVU5Hr1G102770.1	Barley	extracellular, golgi	71.94	78.33
CDY69066	Canola	cytosol	69.39	76.84
Zm00001d013128_P004	Maize	cytosol, plastid	70.41	73.02
KRH73467	Soybean	cytosol, mitochondrion	62.76	72.35
PGSC0003DMT400015459	Potato	cytosol	52.55	72.03
CDX69137	Canola	extracellular	67.35	71.35
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	73.98	69.05
CDX75500	Canola	cytosol	68.88	66.5
Bra011613.1-P	Field mustard	cytosol	68.88	66.5
CDY50208	Canola	extracellular, plasma membrane	68.37	62.33
GSMUA_Achr9P11170_001	Banana	extracellular	82.65	59.56
KXG37427	Sorghum	cytosol, nucleus, plastid	74.49	54.48
Zm00001d034337_P005	Maize	cytosol	74.49	46.5
GSMUA_Achr8P19280_001	Banana	cytosol	37.24	43.2
GSMUA_Achr4P10500_001	Banana	mitochondrion	31.12	42.36
GSMUA_Achr8P26380_001	Banana	cytosol, mitochondrion	29.08	34.34
GSMUA_AchrUn_...	Banana	cytosol	18.37	20.0

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	EnsemblPlantsGene:GSMUA_Achr8G15550_001	EnsemblPlants:GSMUA_Achr8P15550_001	EnsemblPlants:GSMUA_Achr8T15550_001	InterPro:Longin-like_dom_sf	UniProt:M0TQQ8
PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356
UniParc:UPI00029601DA	:	:	:	:	:

Description

AP-1 complex subunit sigma-2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G15550_001]

Coordinates

chr8:-:13170679..13174262

Molecular Weight (calculated)

22751.7 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.283

Length

196 amino acids

Sequence
(BLAST)

001: MSRSGRYGVI ITSVKSRRSR TKIAPRKKGE RRSRSTMIHF VILISRQGKV RLTKWYSPYQ QKERSTVIRE LSGLIPTRGP KLCNFVEWKG YKVVYRRYAS
101: LYFCICIDPD DNELEILEII HHFVEILDRY FGSVCELDLI FNFHKAYYIL DEILIAGELQ ESSKKTVARL IAAQDSPVET AKEEASSISN MMSQAM

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.