Factsheet for AT2G17380.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002054.1-P	Field mustard	cytosol, mitochondrion	99.38	99.38
AT4G35410.2	Thale cress	mitochondrion	96.89	96.3
CDY69066	Canola	cytosol	99.38	90.4
Os03t0783700-00	Rice	plasma membrane	88.82	88.82
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	88.2	88.2
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	88.2	88.2
KRG90038	Soybean	cytosol, mitochondrion	88.2	88.2
KRH17634	Soybean	endoplasmic reticulum	88.2	88.2
HORVU5Hr1G102770.1	Barley	extracellular, golgi	87.58	78.33
HORVU5Hr1G102930.4	Barley	extracellular, golgi	87.58	78.33
Zm00001d013128_P004	Maize	cytosol, plastid	86.96	74.07
CDY50208	Canola	extracellular, plasma membrane	98.76	73.95
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	83.85	68.88
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	87.58	67.14
KXG37427	Sorghum	cytosol, nucleus, plastid	90.06	54.1
AT1G47830.1	Thale cress	mitochondrion	46.58	52.82
GSMUA_Achr9P11170_001	Banana	extracellular	85.09	50.37
Zm00001d034337_P005	Maize	cytosol	90.06	46.18
AT2G19790.1	Thale cress	mitochondrion	36.02	40.56
AT3G50860.1	Thale cress	cytosol	34.16	33.13

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	EntrezGene:816245	UniProt:A0A178W2P0	ProteinID:AAB96888.1	ProteinID:AEC06619.1
Symbol:AP19	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	ArrayExpress:AT2G17380	EnsemblPlantsGene:AT2G17380	RefSeq:AT2G17380
TAIR:AT2G17380	RefSeq:AT2G17380-TAIR-G	EnsemblPlants:AT2G17380.1	TAIR:AT2G17380.1	EMBL:AY085130	EMBL:BT025619
InterPro:Clathrin_sm-chain_CS	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	GO:GO:0030665	GO:GO:0031410
InterPro:Longin-like_dom_sf	RefSeq:NP_565415.1	ProteinID:OAP11392.1	PFAM:PF01217	PIRSF:PIRSF015588	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	UniProt:Q8LEZ8
SUPFAM:SSF64356	EMBL:U92084	UniParc:UPI000009FAB4	:	:	:

Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]

Coordinates

chr2:+:7552992..7555163

Molecular Weight (calculated)

18759.8 Da

IEP (calculated)

7.445

GRAVY (calculated)

-0.032

Length

161 amino acids

Sequence
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.