CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01338

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	EES01338	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	58.96	98.14
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	58.96	98.14
Os03t0783700-00	Rice	plasma membrane	58.96	98.14
Solyc11g005220.1.1	Tomato	nucleus	56.34	93.79
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	56.34	93.79
KRH17634	Soybean	endoplasmic reticulum	55.22	91.93
KRG90038	Soybean	cytosol, mitochondrion	55.22	91.93
Bra002054.1-P	Field mustard	cytosol, mitochondrion	54.48	90.68
AT2G17380.1	Thale cress	cytosol, mitochondrion	54.1	90.06
HORVU5Hr1G102930.4	Barley	extracellular, golgi	60.45	90.0
HORVU5Hr1G102770.1	Barley	extracellular, golgi	60.45	90.0
AT4G35410.2	Thale cress	mitochondrion	53.73	88.89
VIT_01s0127g00810.t01	Wine grape	golgi	57.46	86.52
VIT_16s0050g00660.t01	Wine grape	golgi	57.09	86.44
CDY69066	Canola	cytosol	54.48	82.49
Zm00001d013128_P004	Maize	cytosol, plastid	57.84	82.01
EER93221	Sorghum	mitochondrion	48.51	80.75
PGSC0003DMT400015459	Potato	cytosol	41.04	76.92
CDX69137	Canola	extracellular	52.61	76.22
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	59.7	76.19
KRH73467	Soybean	cytosol, mitochondrion	48.13	75.88
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	54.48	74.49
CDX75500	Canola	cytosol	53.36	70.44
Bra011613.1-P	Field mustard	cytosol	53.36	70.44
CDY50208	Canola	extracellular, plasma membrane	56.34	70.23
EES08264	Sorghum	mitochondrion	29.48	55.63
EES16862	Sorghum	cytosol	29.48	55.63
GSMUA_Achr9P11170_001	Banana	extracellular	55.22	54.41
Zm00001d034337_P005	Maize	cytosol	63.43	54.14
KXG25094	Sorghum	cytosol, mitochondrion	22.76	42.66
EER92601	Sorghum	mitochondrion	21.64	34.94
OQU84502	Sorghum	mitochondrion	21.27	26.89

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	UniProt:A0A1B6QHP4	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	EnsemblPlants:KXG37427	ProteinID:KXG37427	ProteinID:KXG37427.1	InterPro:Longin-like_dom_sf
PFAM:PF01217	ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	EnsemblPlantsGene:SORBI_3001G067900	SUPFAM:SSF64356
UniParc:UPI00081ACEA0	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:5157977..5161857

Molecular Weight (calculated)

30346.9 Da

IEP (calculated)

10.253

GRAVY (calculated)

-0.277

Length

268 amino acids

Sequence
(BLAST)

001: MKKKREKNCM GFYLVVHQTN APPAPSADAH LPRSARLGPK DRIFRAWWRL PLGGVQRRRG SPRLGGGVRR LPPPSLASRL APSPASSTNR PTTLRSRSCY
101: GGSCPSAMIN FVLLISRQGK VRLTKWYSPY TQKERTKVIR ELSGLILTRG PKLCNFVEWR GYKVVYRRYA SLYFCMCIDA DDNELEVLEI IHHFVEILDR
201: YFGSVCELDL IFNFHKAYYI LDEILIAGEL QESSKKNVAR LIAAQDSLVE AAKEEASSIS NIIAQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.