Factsheet for HORVU5Hr1G102930.4

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
TargetP:	secretory
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G079050.3
HORVU3Hr1G066020.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17380.1	HORVU1Hr1G079050.3	AT1G60780.1	23543752
AT2G17380.1	HORVU3Hr1G066020.1	AT1G60780.1	23543752

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G102770.1	Barley	extracellular, golgi	100.0	100.0
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	88.89	99.38
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	88.89	99.38
Os03t0783700-00	Rice	plasma membrane	85.56	95.65
Solyc11g005220.1.1	Tomato	nucleus	81.67	91.3
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	81.67	91.3
KRH17634	Soybean	endoplasmic reticulum	80.0	89.44
KRG90038	Soybean	cytosol, mitochondrion	80.0	89.44
Bra002054.1-P	Field mustard	cytosol, mitochondrion	78.89	88.2
AT2G17380.1	Thale cress	cytosol, mitochondrion	78.33	87.58
VIT_16s0050g00660.t01	Wine grape	golgi	85.56	87.01
AT4G35410.2	Thale cress	mitochondrion	77.78	86.42
VIT_01s0127g00810.t01	Wine grape	golgi	84.44	85.39
CDY69066	Canola	cytosol	80.0	81.36
Zm00001d013128_P004	Maize	cytosol, plastid	83.89	79.89
PGSC0003DMT400015459	Potato	cytosol	61.67	77.62
CDX69137	Canola	extracellular	77.78	75.68
KRH73467	Soybean	cytosol, mitochondrion	69.44	73.53
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	78.33	71.94
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	83.89	71.9
CDX75500	Canola	cytosol	78.33	69.46
Bra011613.1-P	Field mustard	cytosol	78.33	69.46
CDY50208	Canola	extracellular, plasma membrane	81.11	67.91
KXG37427	Sorghum	cytosol, nucleus, plastid	90.0	60.45
HORVU5Hr1G033310.1	Barley	mitochondrion	42.22	53.52
GSMUA_Achr9P11170_001	Banana	extracellular	80.0	52.94
Zm00001d034337_P005	Maize	cytosol	88.89	50.96

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	UniProt:A0A287SID9	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0030117
EnsemblPlantsGene:HORVU5Hr1G102930	EnsemblPlants:HORVU5Hr1G102930.4	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588	ScanProsite:PS00989
PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	TMHMM:TMhelix	UniParc:UPI000B488CF9	:

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:A0A287SID9]

Coordinates

chrchr5H:-:614687075..614688762

Molecular Weight (calculated)

20798.3 Da

IEP (calculated)

7.404

GRAVY (calculated)

0.134

Length

180 amino acids

Sequence
(BLAST)

001: QVLFGVQCHL IFLFFSASLQ INFVLLISRQ GKVRLTKWYS PYTQKERTKV IRELSGLILT RGPKLCNFVE WRGYKVVYRR YASLYFCMCI DADDNELEVL
101: EIIHHFVEIL DRYFGSVCEL DLIFNFHKAY YVLDEILISG ELQESSKKNV ARLIAAQDSL VEAAKEEAGS ISNIIAQATK

Best Arabidopsis Sequence Match ( AT2G17380.1 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYTQKERSK VIRELSGVIL NRGPKLCNFI EWRGYKVVYK RYASLYFCMC IDEADNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT K

Arabidopsis Description

AAP19-1AP-1 complex subunit sigma-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEZ8]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.