Factsheet for Solyc11g005220.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 4
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	98.76	98.76
Os03t0783700-00	Rice	plasma membrane	93.17	93.17
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	91.93	91.93
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	91.93	91.93
VIT_01s0127g00810.t01	Wine grape	golgi	96.27	87.08
VIT_16s0050g00660.t01	Wine grape	golgi	95.03	86.44
HORVU5Hr1G102770.1	Barley	extracellular, golgi	91.3	81.67
HORVU5Hr1G102930.4	Barley	extracellular, golgi	91.3	81.67
Zm00001d013128_P004	Maize	cytosol, plastid	90.68	77.25
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	92.55	70.95
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	86.34	70.92
KXG37427	Sorghum	cytosol, nucleus, plastid	93.79	56.34
Solyc04g081410.2.1	Tomato	plastid	46.58	52.82
GSMUA_Achr9P11170_001	Banana	extracellular	86.96	51.47
Zm00001d034337_P005	Maize	cytosol	94.41	48.41
Solyc05g026130.2.1	Tomato	plastid	37.27	41.96
Solyc02g085240.2.1	Tomato	cytosol	34.16	32.93
Solyc01g109640.2.1	Tomato	cytosol	33.54	32.73

Protein Annotations

MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su	InterPro:Clathrin_sm-chain_CS	ncoils:Coil
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	GO:GO:0030117	UniProt:K4D4D5	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc11g005220.1	EnsemblPlants:Solyc11g005220.1.1
UniParc:UPI00027697A0	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:188098..192547

Molecular Weight (calculated)

18720.8 Da

IEP (calculated)

7.446

GRAVY (calculated)

-0.024

Length

161 amino acids

Sequence
(BLAST)

001: MIHFVLLISR QGKVRLTKWY SPYSQKERTK VIRELSGMIL TRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHFVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELVIA GELQESSKKT VARLIAAQDS LVEAAKEEAS SLSNIIAQAT K

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.