Factsheet for VIT_01s0127g00810.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	golgi, plasma membrane
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g005220.1.1	Tomato	nucleus	87.08	96.27
PGSC0003DMT400015461	Potato	cytosol, mitochondrion	85.96	95.03
TraesCS5D01G430000.1	Wheat	cytosol, mitochondrion	84.83	93.79
TraesCS5B01G423600.1	Wheat	cytosol, mitochondrion	84.83	93.79
Os03t0783700-00	Rice	plasma membrane	83.71	92.55
VIT_16s0050g00660.t01	Wine grape	golgi	91.01	91.53
HORVU5Hr1G102770.1	Barley	extracellular, golgi	85.39	84.44
HORVU5Hr1G102930.4	Barley	extracellular, golgi	85.39	84.44
Zm00001d013128_P004	Maize	cytosol, plastid	82.58	77.78
GSMUA_Achr8P15550_001	Banana	cytosol, mitochondrion	80.34	72.96
GSMUA_Achr3P24130_001	Banana	cytosol, mitochondrion	84.83	71.9
KXG37427	Sorghum	cytosol, nucleus, plastid	86.52	57.46
GSMUA_Achr9P11170_001	Banana	extracellular	80.9	52.94
Zm00001d034337_P005	Maize	cytosol	85.96	48.73
VIT_04s0023g03340.t01	Wine grape	cytosol	41.57	43.02
VIT_11s0016g02840.t01	Wine grape	cytosol, mitochondrion	30.9	40.44
VIT_18s0001g14240.t01	Wine grape	cytosol	41.57	39.36
VIT_04s0023g01770.t01	Wine grape	cytosol, mitochondrion	33.15	35.76

Protein Annotations

EntrezGene:100251707	wikigene:100251707	MapMan:22.1.2.4	Gene3D:3.30.450.60	InterPro:AP_complex_ssu	InterPro:AP_mu_sigma_su
ProteinID:CBI28516	ProteinID:CBI28516.3	InterPro:Clathrin_sm-chain_CS	UniProt:D7TDE3	EMBL:FN595761	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192
GO:GO:0030117	EntrezGene:LOC100251707	wikigene:LOC100251707	InterPro:Longin-like_dom_sf	PFAM:PF01217	PIRSF:PIRSF015588
ScanProsite:PS00989	PANTHER:PTHR11753	PANTHER:PTHR11753:SF32	SUPFAM:SSF64356	TIGR:TC55202	UniParc:UPI0001BE30FA
ArrayExpress:VIT_01s0127g00810	EnsemblPlantsGene:VIT_01s0127g00810	EnsemblPlants:VIT_01s0127g00810.t01	unigene:Vvi.10489	RefSeq:XP_002263114	RefSeq:XP_002263114.1

Description

AP complex subunit sigma [Source:UniProtKB/TrEMBL;Acc:D7TDE3]

Coordinates

chr1:-:8176553..8182556

Molecular Weight (calculated)

20587.2 Da

IEP (calculated)

8.844

GRAVY (calculated)

0.013

Length

178 amino acids

Sequence
(BLAST)

001: MRSRAAINPK FGIVLKVMIH FVLLISRQGK VRLTKWYSPY SQKERTKVIR ELSGVILTRG PKLCNFVEWR GYKVVYKRYA SLYFCMCIDQ DDNELEVLEI
101: IHHFVEILDR YFGSVCELDL IFNFHKAYYV LDELLIAGEL QESSKKTVAR LIAAQDSLVE TAKEEASSIS NIIAQATK

Best Arabidopsis Sequence Match ( AT4G35410.2 )
(BLAST)

001: MIHFVLLVSR QGKVRLTKWY SPYAQKERSK VIRELSGVIL NRGPKLCNFV EWRGYKVVYK RYASLYFCMC IDQEDNELEV LEIIHHYVEI LDRYFGSVCE
101: LDLIFNFHKA YYILDELLIA GELQESSKKT VARIISAQDQ LVEVAKEEAS SISNIIAQAT NR

Arabidopsis Description

AAP19-2AP-1 complex subunit sigma-2 [Source:UniProtKB/Swiss-Prot;Acc:O23685]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.